DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9135 and Rcc1l

DIOPT Version :9

Sequence 1:NP_001285655.1 Gene:CG9135 / 33850 FlyBaseID:FBgn0031769 Length:487 Species:Drosophila melanogaster
Sequence 2:NP_291050.1 Gene:Rcc1l / 94254 MGIID:2137600 Length:461 Species:Mus musculus


Alignment Length:416 Identity:101/416 - (24%)
Similarity:164/416 - (39%) Gaps:86/416 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 GKRDRKNVTKVRPNLYSFHRFTEEKYRYVASGPSAAHTILINMDR---KALGFGRNPSGQLGLSQ 152
            |.|.|:.:..|...|...|:.:.....|       ..|:|.:..:   |..|.|.|...|||..:
Mouse    86 GLRPRRRIQPVPYRLELDHKISSAACGY-------GFTLLSSKTKDVTKVWGMGLNKDSQLGFHR 143

  Fly   153 DIK---------LAEKPTIIP--ALEQLNIVQAAVGRHHTLFLTDTGTVYACGENKSGQCGVGNT 206
            ..|         |...|..:|  ..::..::|.:.||.|:|.|||...|::.|.|..||||....
Mouse   144 SRKDKTRGYEYVLEPSPVPLPLDRPQETKVLQVSCGRAHSLVLTDREGVFSMGNNSHGQCGRKVV 208

  Fly   207 HANIYSPTPINYR----GPPIIRIGCGAEFSVILDIKGSLHTFGLPEYGQ--LGHNTDAKYFVNA 265
            ...:||.:...:|    ...::::.||.:.|:.|..||.:::.|....||  |||          
Mouse   209 EDEVYSESHKVHRMQDFDGQVVQVVCGQDHSLFLTDKGEVYSCGWGADGQTGLGH---------- 263

  Fly   266 NKLSFHFETSPKKVVLYIEKSKEGHVTPVDGVQIVDFACGNNHTVAIDSKKRVYSWGFGGFGRLG 330
                ::..::|.|:        .|.:.   ||.:|..|...:..:|:.:...|:.||...:.:|.
Mouse   264 ----YNITSTPSKL--------GGDLA---GVTVVQVATYGDCCLALSADGGVFGWGNSEYLQLA 313

  Fly   331 HAEPKDEM-VPRLMKFFDTQGRGG-RSVFCGSTFSLIVNELGLLFLFGQN--------KKTGEAN 385
            ......:: |||.:.|   .|.|. :.|.||.|...::|..|.:|::|..        .:|....
Mouse   314 SVTDSTQVNVPRCLPF---SGVGKVKQVACGGTGCAVLNAEGHVFVWGYGILGKGPKLLETAIPE 375

  Fly   386 MYPKPVQDLSGWN----ITDIGCANTSI-MISADDTLIAWGASPTFGELGIGE-----FQKSSTV 440
            |.|..:..|:.:|    ::.|.|..:.. .::....|..||.: ..|.||||.     |....|:
Mouse   376 MIPPTLFGLTEFNPEVQVSQIRCGLSHFAALTNKGELFVWGKN-IRGCLGIGRLEDQYFPWRVTM 439

  Fly   441 PKEVPKLDNIKIP-QVTMGYSHTVLL 465
            |.|         | .|..|..|.|.|
Mouse   440 PGE---------PVDVACGVDHMVTL 456

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9135NP_001285655.1 RCC1 139..184 CDD:278826 15/55 (27%)
RCC1_2 171..200 CDD:290274 11/28 (39%)
RCC1 188..236 CDD:278826 13/51 (25%)
RCC1 239..312 CDD:278826 15/74 (20%)
RCC1 317..366 CDD:278826 14/50 (28%)
RCC1 414..465 CDD:278826 17/56 (30%)
Rcc1lNP_291050.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..35
RCC1 1. /evidence=ECO:0000255 55..121 9/41 (22%)
RCC1 2. /evidence=ECO:0000255 125..188 17/62 (27%)
RCC1 127..186 CDD:278826 16/58 (28%)
RCC1_2 173..202 CDD:290274 11/28 (39%)
RCC1 3. /evidence=ECO:0000255 190..244 14/53 (26%)
RCC1 192..242 CDD:278826 13/49 (27%)
RCC1_2 229..258 CDD:290274 7/28 (25%)
RCC1 4. /evidence=ECO:0000255 245..297 16/76 (21%)
RCC1 245..295 CDD:278826 15/74 (20%)
RCC1 5. /evidence=ECO:0000255 298..350 14/54 (26%)
RCC1 298..348 CDD:278826 14/52 (27%)
RCC1 6. /evidence=ECO:0000255 352..408 10/55 (18%)
RCC1_2 393..422 CDD:290274 5/29 (17%)
RCC1 7. /evidence=ECO:0000255 409..458 18/58 (31%)
RCC1 409..452 CDD:278826 15/52 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5184
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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