DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9135 and sergef

DIOPT Version :9

Sequence 1:NP_001285655.1 Gene:CG9135 / 33850 FlyBaseID:FBgn0031769 Length:487 Species:Drosophila melanogaster
Sequence 2:NP_001072233.1 Gene:sergef / 779680 XenbaseID:XB-GENE-6455308 Length:349 Species:Xenopus tropicalis


Alignment Length:358 Identity:82/358 - (22%)
Similarity:145/358 - (40%) Gaps:99/358 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   140 FGRNPSGQLGL--SQDIKLAEKPTIIPALEQLNIVQAAVGRHHTLFLTDTGTVYACGENKSGQCG 202
            :|.|..||||:  :||..:.:....:|..|.: |...:.|..|:..:|::|.||.||:|..||.|
 Frog    14 WGANSYGQLGVGSTQDTPVPQLVIGLPNHETV-IRSISAGGGHSAAVTESGRVYVCGQNSEGQLG 77

  Fly   203 VGNTHANI----YSPTPINYRGPPIIRIGCGAEFSVILDIKGSLHTFGLPEYGQLGHNTDAKYFV 263
            :.:| .::    ..|..:..|   :.::.||.:|::||...|.|.:.|...|.|||.....:..|
 Frog    78 LDHT-TDVTQFCLCPGALGLR---VSKVSCGWDFTLILAETGELLSCGANTYSQLGRAGAGRSCV 138

  Fly   264 NANKLSFHFETSPKKVVLYIEKSKEGHVTPVDGVQIVDFACGNNHTVAIDSKKRVYSWGFGGFGR 328
                        |:.|  .|:|.|           ::|.|.|..|.:|:....:::.||.|....
 Frog   139 ------------PRPV--GIQKRK-----------VIDVAAGLRHVLALTDNGQIFQWGSGLASH 178

  Fly   329 LGHAEPKDEM-----------VPRLMKFFDTQGRGGRSVFCGSTFSLIVNELGLLFLFGQNKKTG 382
            .....|::.:           ||.:      :|..|:.|..||...:.:::.|.::.:|.||. |
 Frog   179 ARRFSPQNPIPPVYGATEPCPVPGM------EGICGKVVTAGSYHCVALSDAGDMYAWGSNKH-G 236

  Fly   383 EANMYPKP------------------VQDLSGWNITDIGCANTSIMISADDT--LIAWGASPTFG 427
            :. ::|.|                  |...|||          :.:::..||  :..||.: .:.
 Frog   237 QL-LHPDPFLLHPHRVQAHFFLGESIVAVTSGW----------THLVAQTDTGKVFTWGRA-NYS 289

  Fly   428 ELG-------------IGEFQKSSTVPKEVPKL 447
            :||             :.|...::.||..:|.|
 Frog   290 QLGRPPSTEGTGLNETLLEGIPANQVPAWIPSL 322

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9135NP_001285655.1 RCC1 139..184 CDD:278826 13/45 (29%)
RCC1_2 171..200 CDD:290274 10/28 (36%)
RCC1 188..236 CDD:278826 15/51 (29%)
RCC1 239..312 CDD:278826 17/72 (24%)
RCC1 317..366 CDD:278826 11/59 (19%)
RCC1 414..465 CDD:278826 11/49 (22%)
sergefNP_001072233.1 RCC1 11..>294 CDD:332518 77/328 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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