DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9135 and Herc3

DIOPT Version :9

Sequence 1:NP_001285655.1 Gene:CG9135 / 33850 FlyBaseID:FBgn0031769 Length:487 Species:Drosophila melanogaster
Sequence 2:NP_001348895.1 Gene:Herc3 / 73998 MGIID:1921248 Length:1050 Species:Mus musculus


Alignment Length:384 Identity:98/384 - (25%)
Similarity:163/384 - (42%) Gaps:67/384 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   110 RFTEEK-YRYVASGPSAAHTILINMDRKALGFGRNPSGQLGLSQDIKLAEKPTIIPALEQLNIVQ 173
            ||..:: .:.||.|.:  |::.:..|.:....|.|..||||..::   ..||..|.||...:|:.
Mouse    29 RFVSDRSIKEVACGGN--HSVFLLEDGEVYTCGVNTKGQLGHERE---GNKPEQIGALADQHIIH 88

  Fly   174 AAVGRHHTLFLTDTGTVYACGENKSGQCGVGNTHANIYSPTPI-NYRGPPIIRIGCGAEFSVILD 237
            .|.|..|:|.|:|.|.:::.|....||.|:..|..::..|..| ......|:::.||....:.|.
Mouse    89 VACGESHSLALSDRGQLFSWGAGSDGQLGLMTTEDSVAVPRLIQKLNQQTILQVSCGNWHCLALA 153

  Fly   238 IKGSLHTFGLPEYGQLGHNTDAKYFVNANKLSFHFETSPKKVVLYIEKSKEGHVTPVDGVQIVDF 302
            ..|...|:|...:||||...:           |..:|||::            |..::|:.:...
Mouse   154 ADGQFFTWGKNSHGQLGLGKE-----------FPSQTSPQR------------VRSLEGIPLAQV 195

  Fly   303 ACGNNHTVAIDSKKRVYSWGFGGFGRLGHAEPKDEMVPRLMKFFDTQGRGGRSVF--CGSTFSLI 365
            |.|..|:.|:.....|:.||....|:||.::.||...|..:|...||    :.|:  ||...:.:
Mouse   196 AAGGAHSFALSLSGAVFGWGMNNAGQLGLSDEKDRESPCHVKLLRTQ----KVVYISCGEEHTAV 256

  Fly   366 VNELGLLFLF--------GQNKKTGEANMYPKPVQDLSGWNITDIGCA--NTSIMISADDTLIAW 420
            :.:.|.:|.|        |.:....|.|  |:.|.:|.|..:|.|.|.  :|..::.:...:.|:
Mouse   257 LTKSGGVFTFGAGSCGQLGHDSVNDEVN--PRRVLELMGSEVTQIACGRQHTLALVPSSGLIYAF 319

  Fly   421 GASPTFGELGIGEFQKSSTVPKEVPKLDNIKIPQVTMGY--SHTVLLVDTTHEATKQKY 477
            |.... |:||.|.             ..|:|.|....|:  :|:..|   :..|.:.||
Mouse   320 GCGAK-GQLGTGH-------------TCNVKCPSPVKGHWAAHSSQL---SARADRFKY 361

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9135NP_001285655.1 RCC1 139..184 CDD:278826 16/44 (36%)
RCC1_2 171..200 CDD:290274 9/28 (32%)
RCC1 188..236 CDD:278826 11/48 (23%)
RCC1 239..312 CDD:278826 16/72 (22%)
RCC1 317..366 CDD:278826 15/50 (30%)
RCC1 414..465 CDD:278826 11/52 (21%)
Herc3NP_001348895.1 ATS1 2..331 CDD:227511 88/336 (26%)
RCC1 313..377 CDD:366085 15/66 (23%)
HECTc 702..1048 CDD:238033
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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