DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9135 and Herc6

DIOPT Version :9

Sequence 1:NP_001285655.1 Gene:CG9135 / 33850 FlyBaseID:FBgn0031769 Length:487 Species:Drosophila melanogaster
Sequence 2:XP_008761185.1 Gene:Herc6 / 362376 RGDID:1561739 Length:1027 Species:Rattus norvegicus


Alignment Length:331 Identity:85/331 - (25%)
Similarity:137/331 - (41%) Gaps:57/331 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   159 KPTIIPALEQLNIVQAAVGRHHTLFLTDTGTVYACGENKSGQCGVGNTHANIYSPTPINYRGP-P 222
            :|..:.|...|.:::||.|..|:|.|.....||:||:|..||.|..:..:. ..|.||..... .
  Rat    11 QPRRLEAGTGLKLLKAASGERHSLLLFSNHRVYSCGDNSRGQLGQKSPQST-KRPEPIQALSTVH 74

  Fly   223 IIRIGCGAEFSVILDIKGSLHTFGLPEYGQLGHNTDAKYFVNANKLSFHFETSPKKVVLYIEKSK 287
            |..:.||.|.||.:..:|.:.|:|....||||       ...:.::||    .|.|         
  Rat    75 IDLVSCGKEHSVAVCHQGRVFTWGAGSEGQLG-------IGESKEISF----MPTK--------- 119

  Fly   288 EGHVTPVDGVQIVDFACGNNHTVAIDSKKRVYSWGFGGFGRLG-------HAEPKDEMVPRLMKF 345
               :..:.|::|:..:||:.|::|:....:|:|||....|:||       .|.|:        |.
  Rat   120 ---INSLAGIKIIQVSCGHYHSLALSEDGQVFSWGSNRQGQLGLGNNLCSQASPQ--------KV 173

  Fly   346 FDTQGRGGRSVFCGSTFSLIVNELGLLFLFGQNK--------KTGEANMY-PKPVQDLSGWNITD 401
            ...:|.....|..|.|.|..::.:|..|.:|.|:        .:.:..:| |..:..|...|:..
  Rat   174 KSLEGIPLAQVAAGGTHSFALSLMGTSFGWGNNRSGQLALSGNSAKEQIYKPHSIGALKTLNVVY 238

  Fly   402 IGCANTSIMISADDTLIAWGASPTFGELGIGEFQKSSTVPKEVPKL-DNI--KIPQVTMGYSHTV 463
            |.|......:..:|     |...|||.....:.|.|....:..|:| :.|  .:.|:..|..||:
  Rat   239 ISCGYEHTSVLTED-----GQVFTFGGSSSEQLQHSPRSGRGGPQLIEGIGGHVSQIECGSYHTI 298

  Fly   464 LLVDTT 469
            ..|.||
  Rat   299 AYVYTT 304

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9135NP_001285655.1 RCC1 139..184 CDD:278826 8/24 (33%)
RCC1_2 171..200 CDD:290274 11/28 (39%)
RCC1 188..236 CDD:278826 17/48 (35%)
RCC1 239..312 CDD:278826 16/72 (22%)
RCC1 317..366 CDD:278826 15/55 (27%)
RCC1 414..465 CDD:278826 14/53 (26%)
Herc6XP_008761185.1 RCC1 39..88 CDD:278826 17/49 (35%)
RCC1 92..141 CDD:278826 16/71 (23%)
RCC1 144..194 CDD:278826 15/57 (26%)
RCC1_2 182..210 CDD:290274 8/27 (30%)
RCC1_2 236..265 CDD:290274 7/33 (21%)
RCC1 252..299 CDD:278826 14/51 (27%)
HECTc 682..1023 CDD:238033
HECTc 706..1023 CDD:214523
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
22.010

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