DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG9135 and herc1

DIOPT Version :9

Sequence 1:NP_001285655.1 Gene:CG9135 / 33850 FlyBaseID:FBgn0031769 Length:487 Species:Drosophila melanogaster
Sequence 2:XP_009301513.1 Gene:herc1 / 336598 ZFINID:ZDB-GENE-030131-8542 Length:4867 Species:Danio rerio


Alignment Length:375 Identity:103/375 - (27%)
Similarity:175/375 - (46%) Gaps:55/375 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   112 TEEKYRYVASGPSAAH----------TILINMDRKALGFGRNPSGQLGL--SQDIKLAEKPTIIP 164
            |:||.......||.:.          |.:|:.|......|:...|:|||  |.:....:|.|..|
Zfish   384 TQEKILQPKLAPSFSDAQTIEAGQYCTFVISSDGSVRACGKGSYGRLGLGDSNNQSTLKKLTFEP 448

  Fly   165 --ALEQLNIVQAAVGRHHTLFLTDTGTVYACGENKSGQCGVGNTHANIYSPTPIN--YRGPPIIR 225
              |:::::..:.:.|  |||..|..|.|::.|:...|:.|.||:....| |..|.  .:|..::.
Zfish   449 HRAIKKVSSSKGSDG--HTLAFTSEGEVFSWGDGDYGKLGHGNSSTQKY-PKLIQGPLQGKVVVC 510

  Fly   226 IGCGAEFSVILDIKGSLHTFGLPEYGQLGHNTDAKYFVNANKLSFHFETSPKKVVLYIEKSKEGH 290
            :..|...|..:...|.|:|:|..::|:|||.       ::|  |.:..|..|.:      |..|.
Zfish   511 VSAGYRHSAAVSEDGELYTWGEGDFGRLGHG-------DSN--SRNIPTLVKDI------SNVGE 560

  Fly   291 VTPVDGVQIVDFACGNNHTVAIDSKKR-VYSWGFGGFGRLGHAEPKDEMVPRLMKFFDTQGRGGR 354
            |           :||::||:|:....| |:|:|.|..|:|||.:......|::::..  ||...|
Zfish   561 V-----------SCGSSHTIALSKDGRTVWSFGGGDNGKLGHGDTNRVYKPKVVEAL--QGMFIR 612

  Fly   355 SVFCGSTFSLIVNELGLLFLFGQNKKTG----EAN-MYPKPVQDLSGWNITDIGCANT-SIMISA 413
            .|..||..||.:...|.::.:|.....|    ||. :.||.:::|:...:.||...:: .:.:|.
Zfish   613 KVCAGSQSSLALTSTGQVYAWGCGACLGCGSSEATALRPKLIEELATTRVVDISIGDSHCLALSH 677

  Fly   414 DDTLIAWGASPTFGELGIGEFQKSSTVPKEVPKLDNIKIPQVTMGYSHTV 463
            |:.:.||| :.:.|:.|.|......|.||:|..||.:.|.|::.|.||::
Zfish   678 DNEVYAWG-NNSMGQCGQGNSTGPITKPKKVIGLDGVAIQQISAGTSHSL 726

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9135NP_001285655.1 RCC1 139..184 CDD:278826 14/48 (29%)
RCC1_2 171..200 CDD:290274 8/28 (29%)
RCC1 188..236 CDD:278826 13/49 (27%)
RCC1 239..312 CDD:278826 19/72 (26%)
RCC1 317..366 CDD:278826 18/49 (37%)
RCC1 414..465 CDD:278826 18/50 (36%)
herc1XP_009301513.1 RCC1 369..726 CDD:332518 103/373 (28%)
SPRY_HERC1 2004..2161 CDD:293939
UBA_HERC1 2729..2772 CDD:270584
WD40 3406..3773 CDD:330360
WD40 repeat 3419..3452 CDD:293791
WD40 repeat 3479..3514 CDD:293791
WD40 repeat 3527..3569 CDD:293791
WD40 repeat 3575..3611 CDD:293791
WD40 repeat 3618..3660 CDD:293791
WD40 repeat 3665..3710 CDD:293791
WD40 3737..>3831 CDD:330360
WD40 repeat 3749..3784 CDD:293791
RCC1 4004..4351 CDD:332518
HECTc 4479..4847 CDD:238033
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5184
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.820

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