DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9135 and Herc1

DIOPT Version :9

Sequence 1:NP_001285655.1 Gene:CG9135 / 33850 FlyBaseID:FBgn0031769 Length:487 Species:Drosophila melanogaster
Sequence 2:XP_017451567.1 Gene:Herc1 / 315771 RGDID:1306366 Length:4876 Species:Rattus norvegicus


Alignment Length:450 Identity:125/450 - (27%)
Similarity:193/450 - (42%) Gaps:92/450 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 DLDPPSKLPEDLLATLEKTPGQMLIAGM------------VTWDLTGKRDRKNVTKVRPNLYSF- 108
            ||:|   :|||.|..|  ......|.||            ..|.|.||.|          :|.: 
  Rat  3969 DLEP---VPEDELVLL--MDNSKWINGMDEQIMSWATSRPEDWHLGGKCD----------VYLWG 4018

  Fly   109 ---HRFTEEKYRYV---ASGPSAAH----------TILINMDRKALGFGRNPSGQLGL--SQDIK 155
               |....|..|.|   |:.||.:.          |.:|..:...|..|....|:||.  |.|:.
  Rat  4019 AGRHGQLAEAGRNVMVPATAPSFSQAQQVICGQNCTFVIQANGTVLACGEGSYGRLGQGNSDDLH 4083

  Fly   156 LAEKPTIIPALEQLNIVQAAV---GRHHTLFLTDTGTVYACGENKSGQCGVGNTHANIYSPTPIN 217
            :.   |:|.||:...:.|...   ...|::.||::|.|::.|:...|:.|.||:... ..|..|.
  Rat  4084 VL---TVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQ-RRPRQIE 4144

  Fly   218 -YRGPPIIRIGCGAEFSVILDIKGSLHTFGLPEYGQLGHNTDAKYFVNANKLSFHFETSPKKVVL 281
             .:|..::::.||.:.|.::...|.|.|||..:||:||..                .||.||:  
  Rat  4145 ALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLG----------------NTSNKKL-- 4191

  Fly   282 YIEKSKEGHVTPVDGVQIVDFACGNNHTVAIDSK-KRVYSWGFGGFGRLGHAEPKDEMVPRLMKF 345
                  ...||.::|.||...|||.|||:|:.:. ..|:::|.|.:|:||......:..|:  |.
  Rat  4192 ------PERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAKSSPQ--KV 4248

  Fly   346 FDTQGRGGRSVFCGSTFSLIVNELGLLFLFGQNK----KTGEANMYPKPVQ--DLSGWNITD--I 402
            ....|.|.:.|.||:.||:.:.:.|.::.|||::    ..|.|..:.:|.|  .|:|..|.|  :
  Rat  4249 DVLCGIGIKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRARNHNRPQQIPVLAGVVIEDVAV 4313

  Fly   403 GCANTSIMISADDTLIAWGASPTFGELGIGEFQKSSTVPKEVPKLDNIKIPQVTMGYSHT 462
            |..:|..:.|..| :.||| |.:.|:||:|. ......|..|..|....|.|::.|..|:
  Rat  4314 GAEHTLALASTGD-VYAWG-SNSEGQLGLGH-TNHVREPTLVTVLQGKNIRQISAGRCHS 4370

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9135NP_001285655.1 RCC1 139..184 CDD:278826 12/49 (24%)
RCC1_2 171..200 CDD:290274 7/31 (23%)
RCC1 188..236 CDD:278826 13/48 (27%)
RCC1 239..312 CDD:278826 24/72 (33%)
RCC1 317..366 CDD:278826 15/48 (31%)
RCC1 414..465 CDD:278826 16/48 (33%)
Herc1XP_017451567.1 RCC1 421..472 CDD:278826
RCC1 476..526 CDD:278826
RCC1 529..576 CDD:278826
RCC1 579..629 CDD:278826
RCC1 633..680 CDD:278826
RCC1_2 667..696 CDD:290274
RCC1 683..733 CDD:278826
SPRY_HERC1 2030..2187 CDD:293939
UBA_HERC1 2751..2794 CDD:270584
WD40 3409..3793 CDD:225201
WD40 3439..3790 CDD:295369
WD40 repeat 3447..3490 CDD:293791
WD40 repeat 3504..3539 CDD:293791
WD40 repeat 3544..3591 CDD:293791
WD40 repeat 3600..3638 CDD:293791
WD40 repeat 3644..3679 CDD:293791
WD40 repeat 3687..3718 CDD:293791
WD40 repeat 3765..3801 CDD:293791
RCC1 4060..4112 CDD:278826 13/54 (24%)
RCC1 4115..4164 CDD:278826 13/49 (27%)
RCC1 4167..4216 CDD:278826 24/72 (33%)
RCC1 4219..4269 CDD:278826 15/51 (29%)
RCC1 4272..4321 CDD:278826 14/48 (29%)
RCC1_2 4308..4337 CDD:290274 10/30 (33%)
RCC1 4325..4373 CDD:278826 16/48 (33%)
HECTc 4488..4856 CDD:238033
HECTc 4519..4852 CDD:214523
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.920

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