DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9135 and HERC4

DIOPT Version :9

Sequence 1:NP_001285655.1 Gene:CG9135 / 33850 FlyBaseID:FBgn0031769 Length:487 Species:Drosophila melanogaster
Sequence 2:XP_011537894.1 Gene:HERC4 / 26091 HGNCID:24521 Length:1081 Species:Homo sapiens


Alignment Length:413 Identity:109/413 - (26%)
Similarity:167/413 - (40%) Gaps:104/413 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    77 GQMLIAGMVTWDLTGKRDRKNVTKVRPNLYSFHRFTEEKYRYVASGPSAAHTILINMDRKALGFG 141
            ||:.:.|:         |.:.|.:.|.:.:    |..::.|.|..|  ..||:.:..|......|
Human    10 GQLGLGGI---------DEEIVLEPRKSDF----FINKRVRDVGCG--LRHTVFVLDDGTVYTCG 59

  Fly   142 RNPSGQLGLSQDIKLAEKPTIIPALEQLNIVQAAVGRHHTLFLTDTGTVYACGENKSGQCG-VGN 205
            .|..||||..   |..:||..:.||:..|||..:.|..|||.|.|.|.|||.|.:..||.| ||:
Human    60 CNDLGQLGHE---KSRKKPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGLVGS 121

  Fly   206 THA-----------------------------NIYSPTPINYRGPPIIRIGCGAEFSVILDIKGS 241
            ...                             ||.|.:.|.     |:::.||...|:.|.....
Human   122 EECIRVPSCFPKIMCVDSLVRICSGLSYGRIRNIKSLSDIQ-----IVQVACGYYHSLALSKASE 181

  Fly   242 LHTFGLPEYGQLGHNTDAKYFVNANKLSFHFETSPK--KVVLYIEKSKEGHVTPVDGVQIVDFAC 304
            :..:|..:|||||..||.|.           :|||:  |.:|              |:..:..|.
Human   182 VFCWGQNKYGQLGLGTDCKK-----------QTSPQLLKSLL--------------GIPFMQVAA 221

  Fly   305 GNNHTVAIDSKKRVYSWGFGGFGRLGHAEPKDEMVPRLMKFFDTQGRGGRSVF--CGSTFSLIVN 367
            |..|:..:.....::.||...||:||..:..|..||.|:|...:|    :.|:  ||...:..:.
Human   222 GGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSLRSQ----KIVYICCGEDHTAALT 282

  Fly   368 ELGLLFLF--------GQNKKTGEANMYPKPVQDLSGWNITDIGCA--NTSIMISADDTLIAWGA 422
            :.|.:|.|        |.|..:.|.|  |:.|.:|.|..:|:|.|.  :||..:.:...:.::|.
Human   283 KEGGVFTFGAGGYGQLGHNSTSHEIN--PRKVFELMGSIVTEIACGRQHTSAFVPSSGRIYSFGL 345

  Fly   423 SPTFGELGIGEFQKSSTVPKEVP 445
            ... |:||.|     ||..::.|
Human   346 GGN-GQLGTG-----STSNRKSP 362

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9135NP_001285655.1 RCC1 139..184 CDD:278826 18/44 (41%)
RCC1_2 171..200 CDD:290274 13/28 (46%)
RCC1 188..236 CDD:278826 18/77 (23%)
RCC1 239..312 CDD:278826 18/74 (24%)
RCC1 317..366 CDD:278826 15/50 (30%)
RCC1 414..465 CDD:278826 8/32 (25%)
HERC4XP_011537894.1 RCC1 2..368 CDD:332518 109/413 (26%)
HECTc 733..1079 CDD:238033
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.920

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