DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG9135 and Herc1

DIOPT Version :10

Sequence 1:NP_608985.1 Gene:CG9135 / 33850 FlyBaseID:FBgn0031769 Length:487 Species:Drosophila melanogaster
Sequence 2:XP_006511166.1 Gene:Herc1 / 235439 MGIID:2384589 Length:4885 Species:Mus musculus


Alignment Length:450 Identity:125/450 - (27%)
Similarity:193/450 - (42%) Gaps:92/450 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 DLDPPSKLPEDLLATLEKTPGQMLIAGM------------VTWDLTGKRDRKNVTKVRPNLYSF- 108
            ||:|   :|||.|..|  ......|.||            ..|.|.||.|          :|.: 
Mouse  3978 DLEP---VPEDELVLL--MDNSKWINGMDEQIMSWATSRPEDWHLGGKCD----------VYLWG 4027

  Fly   109 ---HRFTEEKYRYV---ASGPSAAH----------TILINMDRKALGFGRNPSGQLGL--SQDIK 155
               |....|..|.|   |:.||.:.          |.:|..:...|..|....|:||.  |.|:.
Mouse  4028 AGRHGQLAEAGRNVMVPATAPSFSQAQQVICGQNCTFVIQANGTVLACGEGSYGRLGQGNSDDLH 4092

  Fly   156 LAEKPTIIPALEQLNIVQAAV---GRHHTLFLTDTGTVYACGENKSGQCGVGNTHANIYSPTPIN 217
            :.   |:|.||:...:.|...   ...|::.||::|.|::.|:...|:.|.||:... ..|..|.
Mouse  4093 VL---TVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNSDRQ-RRPRQIE 4153

  Fly   218 -YRGPPIIRIGCGAEFSVILDIKGSLHTFGLPEYGQLGHNTDAKYFVNANKLSFHFETSPKKVVL 281
             .:|..::::.||.:.|.::...|.|.|||..:||:||..                .||.||:  
Mouse  4154 ALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLG----------------NTSNKKL-- 4200

  Fly   282 YIEKSKEGHVTPVDGVQIVDFACGNNHTVAIDSK-KRVYSWGFGGFGRLGHAEPKDEMVPRLMKF 345
                  ...||.::|.||...|||.|||:|:.:. ..|:::|.|.:|:||......:..|:  |.
Mouse  4201 ------PERVTALEGYQIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAKSSPQ--KV 4257

  Fly   346 FDTQGRGGRSVFCGSTFSLIVNELGLLFLFGQNK----KTGEANMYPKPVQ--DLSGWNITD--I 402
            ....|.|.:.|.||:.||:.:.:.|.::.|||::    ..|.|..:.:|.|  .|:|..|.|  :
Mouse  4258 DVLCGIGIKKVACGTQFSVALTKDGHVYTFGQDRLIGLPEGRARNHNRPQQIPVLAGVVIEDVAV 4322

  Fly   403 GCANTSIMISADDTLIAWGASPTFGELGIGEFQKSSTVPKEVPKLDNIKIPQVTMGYSHT 462
            |..:|..:.|..| :.||| |.:.|:||:|. ......|..|..|....|.|::.|..|:
Mouse  4323 GAEHTLALASTGD-VYAWG-SNSEGQLGLGH-TNHVREPTLVTVLQGKNIRQISAGRCHS 4379

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9135NP_608985.1 ATS1 119..469 CDD:444065 105/371 (28%)
Herc1XP_006511166.1 ATS1 374..703 CDD:444065
RCC1 683..733 CDD:395335
SPRY_HERC1 2039..2196 CDD:293939
UBA_HERC1 2760..2803 CDD:270584
WD40 <3448..3802 CDD:441893
WD40 repeat 3456..3499 CDD:293791
WD40 repeat 3513..3548 CDD:293791
WD40 repeat 3610..3648 CDD:293791
WD40 repeat 3653..3689 CDD:293791
WD40 repeat 3697..3736 CDD:293791
WD40 repeat 3774..3810 CDD:293791
ATS1 4023..4359 CDD:444065 102/368 (28%)
HECTc 4497..4865 CDD:238033
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.