DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9135 and Rpgr

DIOPT Version :9

Sequence 1:NP_001285655.1 Gene:CG9135 / 33850 FlyBaseID:FBgn0031769 Length:487 Species:Drosophila melanogaster
Sequence 2:NP_001171421.1 Gene:Rpgr / 19893 MGIID:1344037 Length:1039 Species:Mus musculus


Alignment Length:430 Identity:108/430 - (25%)
Similarity:168/430 - (39%) Gaps:138/430 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   111 FTEEKYRYVASGPSA---------------AHTILINMDRKALGFGRNPSGQLGLSQDIKLAEKP 160
            ||..|.::..:.||.               .||.::..:.|...||.|..|||||.....:. ||
Mouse    53 FTFGKTKFAENIPSKFWFKNDIPICLSCGDEHTAIVTGNNKLYMFGSNNWGQLGLGSKAAII-KP 116

  Fly   161 TIIPALEQLNIVQAAVGRHHTLFLTDTGTVYACGENKSGQCGVGNT------------------- 206
            |.|.||:...:..||.||:|||..||||.|||.|.|..||.|:|:|                   
Mouse   117 TCIKALKPEKVKLAACGRNHTLVSTDTGGVYAAGGNNEGQLGLGDTDDRDTFHQIVFFTPADTIK 181

  Fly   207 ---------------------------------HANIYSPTPINYRGPPIIRIGCGAEFSVILDI 238
                                             .:|:..|..:.. |.||..|.||...|..:.:
Mouse   182 QLSAGANTSAALTEDGKLFMWGDNSEGQIGLEDKSNVCIPHEVTV-GKPISWISCGYYHSAFVTM 245

  Fly   239 KGSLHTFGLPEYGQLGHNTDAKYFVNANKLSFHFETSPKKVVLYIEKSKEGHVTPVDGVQIVDFA 303
            .|.|:|||.||.|:||         ..|:|..: ..||::|:...|:             ::..|
Mouse   246 DGELYTFGEPENGKLG---------LPNELLMN-HRSPQRVLGIPER-------------VIQVA 287

  Fly   304 CGNNHTVAIDSKKRVYSWGFGGFGRLG-------HAEPKDEMVPRLMKFFDTQGRGGRSVFCGST 361
            ||..|||.: ::|.||::|.|.||:||       .:|||  ::.|:      :.:....:.||..
Mouse   288 CGGGHTVVL-TEKVVYAFGLGQFGQLGLGTFLFETSEPK--IIERI------KDQKICHISCGEN 343

  Fly   362 FSLIVNELGLLFLFGQNK--KTG------EANMYPKPVQDLSGWNITDIGCANTSIMISADDTLI 418
            .:.::.|||||:.||..:  |.|      ....:|....:...:.:..|.|....:::.      
Mouse   344 HTALMTELGLLYTFGDGRHGKLGLGMENFTNQFFPTLCSNFLRFAVQLIACGGCHMLVF------ 402

  Fly   419 AWGASPTFGELGIGEFQKSSTVPKEVPKLDNIKIPQVTMG 458
               |:|..|.:             :.||.:::..|.::.|
Mouse   403 ---ATPRLGTI-------------DEPKFEDVYEPYISTG 426

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9135NP_001285655.1 RCC1 139..184 CDD:278826 21/44 (48%)
RCC1_2 171..200 CDD:290274 16/28 (57%)
RCC1 188..236 CDD:278826 20/99 (20%)
RCC1 239..312 CDD:278826 22/72 (31%)
RCC1 317..366 CDD:278826 14/55 (25%)
RCC1 414..465 CDD:278826 7/45 (16%)
RpgrNP_001171421.1 RCC1_2 78..104 CDD:290274 6/25 (24%)
RCC1 93..139 CDD:278826 21/46 (46%)
RCC1 144..193 CDD:278826 11/48 (23%)
RCC1_2 180..209 CDD:290274 0/28 (0%)
RCC1 196..243 CDD:278826 9/47 (19%)
RCC1 246..296 CDD:278826 22/72 (31%)
RCC1 301..348 CDD:278826 14/54 (26%)
RCC1 352..398 CDD:278826 10/45 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5184
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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