DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG9135 and nek8

DIOPT Version :9

Sequence 1:NP_001285655.1 Gene:CG9135 / 33850 FlyBaseID:FBgn0031769 Length:487 Species:Drosophila melanogaster
Sequence 2:NP_620776.1 Gene:nek8 / 171094 ZFINID:ZDB-GENE-020509-1 Length:697 Species:Danio rerio


Alignment Length:509 Identity:111/509 - (21%)
Similarity:172/509 - (33%) Gaps:173/509 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    78 QMLIAGMVTWDLTGKRDRKN-----VTKVRP--NLYS-----FHRFTEEKYRYVASGPSAAHTIL 130
            :.||..|:..| ..||.:.|     ...:||  |||:     ..|..|:....|.:||.......
Zfish   232 RQLILNMLNLD-PSKRPQLNEIMAHAICIRPLLNLYTDIGNVKMRRIEKPLSNVQAGPHGRPGGW 295

  Fly   131 INMDRKALGFGRNPSGQL--------------GLSQDIKLAEKPTIIPALEQLNIVQAAVGRHHT 181
            |...|...|.....|.::              |:|..::|       |.| ...::|.::||...
Zfish   296 ITSTRTRGGLSSLTSSKMMHPLPLFSVYTWGSGISTPLRL-------PML-NTEVIQVSLGRTQK 352

  Fly   182 LFLTDTGTVYACGENKSGQC------GVGNTHANIYSPTPINYRGPPII-------------RIG 227
            :           |..|||:.      .||:....:  |..:....|..|             .:.
Zfish   353 M-----------GVTKSGRLITWEAPSVGSGEPTL--PGAVEQMQPQFISRFLEGQSGVTIKSVS 404

  Fly   228 CGAEFSVILDIKGSLHTFGLPEYGQLGHNTDAKYFVNANKLSFHFETSPKKVVLYIEKSKEGHVT 292
            ||..|:..|..:|.:.|||....|.|||.            :|:..|.||.|...:         
Zfish   405 CGDLFTTCLTDRGIIMTFGSGSNGCLGHG------------NFNDVTQPKIVEALL--------- 448

  Fly   293 PVDGVQIVDFACGNNHTVAIDSKKRVYSWGFGGFGRLGHAEPKDEMVPRLMKF---FDTQ----- 349
               |.::|..:||.:|.:|:.:::.|:|||.|..||||.|.......|:.:..   |:.|     
Zfish   449 ---GYELVQVSCGASHVLAVTNEREVFSWGRGDNGRLGLATQDSHNCPQQVSLPADFEAQRVLCG 510

  Fly   350 ------------------------------GRGGRSVFC-------------------------- 358
                                          |....|.||                          
Zfish   511 VDCSMIMSTQHQILACGNNRFNKLGLDKVSGTEEPSSFCQVEEVHLFQLVQSAPLNTEKIVYIDI 575

  Fly   359 GSTFSLIVNELGLLFLFGQNK--KTG----EANMYPKPVQDLSGWNITDIGCANT-SIMISADDT 416
            |:..|:.|.|.|..|.||.|:  :.|    .::..|..|..|.|  ||...|.:. ::.|.|:..
Zfish   576 GTAHSVAVTEKGQCFTFGSNQHGQLGCSHRRSSRVPYQVSGLQG--ITMAACGDAFTLAIGAEGE 638

  Fly   417 LIAWGASPTFGELG-IGEFQKSSTVPKEVPKLDN---IKIPQVTMGYSHTVLLV 466
            :..||.    |..| :|..::...:||.| :||.   ..:..|...:.:|:|.|
Zfish   639 VYTWGK----GARGRLGRKEEDFGIPKPV-QLDESHAFTVTSVACCHGNTLLAV 687

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9135NP_001285655.1 RCC1 139..184 CDD:278826 10/58 (17%)
RCC1_2 171..200 CDD:290274 6/28 (21%)
RCC1 188..236 CDD:278826 12/66 (18%)
RCC1 239..312 CDD:278826 18/72 (25%)
RCC1 317..366 CDD:278826 19/112 (17%)
RCC1 414..465 CDD:278826 12/54 (22%)
nek8NP_620776.1 STKc_Nek8 3..258 CDD:270859 7/26 (27%)
S_TKc 4..255 CDD:214567 7/23 (30%)
ATS1 309..662 CDD:227511 83/403 (21%)
RCC1 1 417..468 19/74 (26%)
RCC1 2 469..520 13/50 (26%)
RCC1 3 521..586 7/64 (11%)
RCC1 4 587..636 14/50 (28%)
RCC1 5 637..689 14/56 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

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