DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9135 and Rcc2

DIOPT Version :9

Sequence 1:NP_001285655.1 Gene:CG9135 / 33850 FlyBaseID:FBgn0031769 Length:487 Species:Drosophila melanogaster
Sequence 2:NP_776292.1 Gene:Rcc2 / 108911 MGIID:1919784 Length:520 Species:Mus musculus


Alignment Length:518 Identity:230/518 - (44%)
Similarity:308/518 - (59%) Gaps:42/518 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 RKAG--------GNG---AGPNKR-RPKKKESDYEDEFSDES------DDDGVQQQAAAANQMEV 51
            ||.|        |||   |||.:| .|..::.:..:..|..|      |:||.:...|.......
Mouse     3 RKKGAAWEEPSSGNGTARAGPRRRGGPAGRKRERPERCSSSSGGGSSGDEDGPELDGAPGGGKRT 67

  Fly    52 LIPHDD---------LDPPSKLPEDLLATLEKTPGQMLIAGMVTWDLTGKRDRKNVTK------- 100
            ..|...         :..|....|.:.....|..||:||.|...|||.|   ||.|.|       
Mouse    68 ARPATAGKAAGAAAIITEPEHTKERVKLEGSKCKGQLLIFGATNWDLIG---RKEVPKQQAAYRN 129

  Fly   101 VRPNLYSFHRF---TEEKYRYVASGPSAAHTILINMDRKALGFGRNPSGQLGLSQDIKLAEKPTI 162
            :..||:..||:   :..:.|.|.||..|||::||..:.|...:|||..|||| ..|.|..|.|.:
Mouse   130 LGQNLWGPHRYGCLSGVRVRTVVSGSCAAHSLLITTEGKLWSWGRNEKGQLG-HGDTKRVEAPRL 193

  Fly   163 IPALEQLNIVQAAVGRHHTLFLTDTGTVYACGENKSGQCGVGNTHANIYSPTPINYRGPPIIRIG 227
            |.||....||.||.||:|||.|||||:|:|.||||.||.|:||....:.||..|.|.|.||.::.
Mouse   194 IEALSHEAIVLAACGRNHTLALTDTGSVFAFGENKMGQLGLGNQTDAVPSPAQIMYNGQPITKMA 258

  Fly   228 CGAEFSVILDIKGSLHTFGLPEYGQLGHNTDAKYFVNANKLSFHFETSPKKVVLYIEKSKEGHVT 292
            ||||||:::|.||:|::||.|||||||||:|.|:...|.::.:..|..|::|.::|||:|:|.:.
Mouse   259 CGAEFSMLMDCKGNLYSFGCPEYGQLGHNSDGKFIARAQRIEYDCELVPRRVAIFIEKTKDGQIL 323

  Fly   293 PVDGVQIVDFACGNNHTVAIDSKKRVYSWGFGGFGRLGHAEPKDEMVPRLMKFFDTQGRGGRSVF 357
            ||..|.:.|.|||.|||:.:||:|||:||||||:|||||||.||||||||:|.||..|||...::
Mouse   324 PVPNVVVRDVACGANHTLVLDSQKRVFSWGFGGYGRLGHAEQKDEMVPRLVKLFDFPGRGATQIY 388

  Fly   358 CGSTFSLIVNELGLLFLFGQNKKTGEANMYPKPVQDLSGWNITDIGCANTSIMISADDTLIAWGA 422
            .|.|.|..|:|:|.||.:|....:.|:.||||.||||.||.|..:.|..:||:::||::.|:||.
Mouse   389 AGYTCSFAVSEVGGLFFWGATNTSRESTMYPKAVQDLCGWRIRSLACGKSSIIVAADESTISWGP 453

  Fly   423 SPTFGELGIGEFQ-KSSTVPKEVPKLDNIKIPQVTMGYSHTVLLVDTTHEATKQKYEKMPEYT 484
            ||||||||.|:.: ||||..:||..||.|...||.|||||::::.....||.|:|.:::||||
Mouse   454 SPTFGELGYGDHKPKSSTAAQEVKTLDGIFSEQVAMGYSHSLVIARDESEAEKEKLQRLPEYT 516

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9135NP_001285655.1 RCC1 139..184 CDD:278826 23/44 (52%)
RCC1_2 171..200 CDD:290274 20/28 (71%)
RCC1 188..236 CDD:278826 25/47 (53%)
RCC1 239..312 CDD:278826 35/72 (49%)
RCC1 317..366 CDD:278826 32/48 (67%)
RCC1 414..465 CDD:278826 29/51 (57%)
Rcc2NP_776292.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..78 18/74 (24%)
RCC1 1 101..163 24/64 (38%)
ATS1 129..479 CDD:227511 178/350 (51%)
RCC1 2 166..217 25/51 (49%)
RCC1 3 219..269 25/49 (51%)
RCC1 4 271..345 34/73 (47%)
Required for interaction with RAC1. /evidence=ECO:0000250|UniProtKB:Q9P258 316..323 3/6 (50%)
RCC1 5 346..399 34/52 (65%)
RCC1 6 401..445 19/43 (44%)
RCC1 7 446..499 28/52 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846940
Domainoid 1 1.000 42 1.000 Domainoid score I12391
eggNOG 1 0.900 - - E1_COG5184
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H10282
Inparanoid 1 1.050 416 1.000 Inparanoid score I1804
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54771
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0006921
OrthoInspector 1 1.000 - - oto94790
orthoMCL 1 0.900 - - OOG6_105844
Panther 1 1.100 - - LDO PTHR46207
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5530
SonicParanoid 1 1.000 - - X4391
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1514.790

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