DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9135 and herc6

DIOPT Version :9

Sequence 1:NP_001285655.1 Gene:CG9135 / 33850 FlyBaseID:FBgn0031769 Length:487 Species:Drosophila melanogaster
Sequence 2:XP_031759089.1 Gene:herc6 / 100487734 XenbaseID:XB-GENE-968556 Length:1030 Species:Xenopus tropicalis


Alignment Length:346 Identity:93/346 - (26%)
Similarity:158/346 - (45%) Gaps:56/346 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   140 FGRNPSGQLGLSQDIKLAEKPTIIPALE------QLNIVQAAVGRHHTLFLTDTGTVYACGENKS 198
            :|.|..|||.|.|..|     .::...|      |..:.:.:.|..|||:|.:.||:.:||:|..
 Frog     4 WGDNCFGQLALLQGEK-----EVVHFKENDYFQSQECVQKVSCGEKHTLYLLEDGTLLSCGQNPY 63

  Fly   199 GQCGVGNTHANIYSPTPINYRGPPIIRIGCGAEFSVILDIKGSLHTFGLPEYGQLGHNTDAKYFV 263
            ||.|..:.:::|...:.:  ....|:.|.||...||.:..:||::::|....||||         
 Frog    64 GQLGRKSNNSSIEQISSL--EAQTIVDISCGTNHSVAVSDEGSIYSWGDGSEGQLG--------- 117

  Fly   264 NANKLSFHFETSPKKVVLYIEKSKEGHVTPVDGVQIVDFACGNNHTVAIDSKKRVYSWGFGGFGR 328
            ..|..|.:|  :|||            :|.:...:|:..:|||.|::|:....||:|||....|:
 Frog   118 TGNLSSRNF--TPKK------------ITGLFNTKIIQISCGNFHSLALSEDGRVFSWGQNKCGQ 168

  Fly   329 LG-HAEPKDEMVPRLMKFFDTQGRGGRSVFCGSTFSLIVNELGLLFLFGQNK-----------KT 381
            || .::..::..|:|:|  ..:|.....|..|.:.|..::..|.:|.:|:|.           |.
 Frog   169 LGLGSQIINQATPQLVK--SLKGIPLVQVTAGGSQSFALSMSGTVFAWGKNNAGQLGFKSDPMKA 231

  Fly   382 GEANMYPKPVQDLSGWNITDIGCANT-SIMISADDTLIAWGASPTFGELGIGEFQKSSTVPKEVP 445
            |  ...|..|..|....:..|.|... :.::|.|.::..:| ..|.|:||.....::| ||:::.
 Frog   232 G--TFKPHAVNSLRNLGVAYISCGEEHTAVLSKDGSVYTFG-DDTHGQLGQNSGNQTS-VPQKIE 292

  Fly   446 KLDNIKIPQVTMGYSHTVLLV 466
            .... ::.||..|..||:|.|
 Frog   293 DYAG-QVSQVACGRYHTLLYV 312

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9135NP_001285655.1 RCC1 139..184 CDD:278826 14/49 (29%)
RCC1_2 171..200 CDD:290274 10/28 (36%)
RCC1 188..236 CDD:278826 15/47 (32%)
RCC1 239..312 CDD:278826 19/72 (26%)
RCC1 317..366 CDD:278826 15/49 (31%)
RCC1 414..465 CDD:278826 14/50 (28%)
herc6XP_031759089.1 ATS1 2..373 CDD:227511 93/346 (27%)
HUL4 324..1021 CDD:227354
HECTc 684..1028 CDD:238033
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1062377at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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