DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mtm and Mtmr3

DIOPT Version :9

Sequence 1:NP_001285651.1 Gene:mtm / 33845 FlyBaseID:FBgn0025742 Length:619 Species:Drosophila melanogaster
Sequence 2:XP_006514908.1 Gene:Mtmr3 / 74302 MGIID:1921552 Length:1205 Species:Mus musculus


Alignment Length:598 Identity:206/598 - (34%)
Similarity:296/598 - (49%) Gaps:108/598 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 PFGYLEGEEDQDQKNDVTYVCPYRGPVFGA-LTITNYRLYFRSLPLRDQEPPVVVDVPLGVIARV 109
            ||..|.||..:           |.|....| :.::||||:     ::.:|.  :|:|||.:|..|
Mouse    33 PFLELHGESTE-----------YVGRAEEAIIALSNYRLH-----IKFKES--LVNVPLQLIESV 79

  Fly   110 EKIGGATSRGENSYGIEIFCKDMRNLRFAHKQQNHSRRTVFEKLQ------ANAF-PLSYSGRLF 167
            |        ..:.:.:.:.|||.:.:|        .:...||:.|      .||. |......||
Mouse    80 E--------CRDIFQLHLTCKDCKVIR--------CQFPTFEQCQDWLKRLNNAIRPPGKIEDLF 128

  Fly   168 AFA--------HAAANSVNGNGGWDGWAVYEPLA-ELRRLGVP-NDMWRATKLNESYAICDSYPA 222
            :||        :|:....:|:....|..|..... |:.|:|.. |:.||.:.:||.|.:|.|||.
Mouse   129 SFAYHAWCMEVYASEKEQHGDLCRPGEHVTSRFKNEVERMGFDMNNAWRISNINEKYKLCGSYPQ 193

  Fly   223 VWAVPKAASDDFLRRVAQFRSRCRLPVLSWMNPRTQATITRCSQPLVGVSGKRNSDDEAYLSFIM 287
            ...||...:|..|..||.|||..|:|.:.:.:....|.|.||.||.|...|.||:|||..:..:.
Mouse   194 ELIVPAWITDKELESVAGFRSWKRIPAVIYRHQSNGAVIARCGQPEVSWWGWRNADDEHLVQSVA 258

  Fly   288 EANA---------------------------------------------QSDKLTIMDARPSANA 307
            .|.|                                             |..||.|:|||..|.|
Mouse   259 RACASDSQSSISKVSTRNSCRDFPNAGDLSDVEFDSSLSNTSGAESLALQPQKLLILDARSYAAA 323

  Fly   308 IANKAKGGGYESEDAYKNVEINFLDIHNIHVMRESLRKVKEACFPTTDDSKWQTAIDNTLWLKHI 372
            :||:|||||.|..:.|.|.|:.|:.:.|||.:|.|.:.::..|....|...|.:|:::|.||.|:
Mouse   324 VANRAKGGGCECPEYYPNCEVVFMGMANIHSIRRSFQSLRLLCTQMPDPGNWLSALESTKWLHHL 388

  Fly   373 RCILAGAVRIVDKVETMSTSVVVHCSDGWDRTAQLTALSMLLLDPHYRTVRGFEVLIEKEWLSFG 437
            ..:|..|:.:|..|:.....|:||||||||||.|:.||:.|||||:|||:.||:||:|.|||.||
Mouse   389 SVLLKSALLVVHAVDRDQRPVLVHCSDGWDRTPQIVALAKLLLDPYYRTIEGFQVLVEMEWLDFG 453

  Fly   438 HKFQQRIGHGDNKHSDADRSPVFLQFIDSVWQVSQQFNNAFEFNEHFLITIVDHLYSCRFGTFLC 502
            |||..|.|||::.....:|.|||||::|.|.|:.:||..:|||||.||:.:|.|.|||.||||||
Mouse   454 HKFADRCGHGEDSDDLNERCPVFLQWLDCVHQLQRQFPCSFEFNEAFLVKLVQHTYSCLFGTFLC 518

  Fly   503 NTEAERVAEDLKHKTTSLWTHINSSLDQYLNPLFPSFTHGAELVLRPIASVRSVRLWKGLY--CR 565
            |...||..:..:.:|.|:|:.:.:....:.|.|:.|   .:|.||.|:..||::.||..:|  |.
Mouse   519 NNAKERGEKQTQERTCSVWSLLRAGNKAFKNLLYSS---QSEAVLYPVCHVRNLMLWSAVYLPCP 580

  Fly   566 WNPGL-----CAP 573
             :|..     |||
Mouse   581 -SPSTPTDDSCAP 592

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mtmNP_001285651.1 PH-GRAM_MTMR2_insect-like 57..159 CDD:270164 24/109 (22%)
Myotub-related 184..509 CDD:399535 149/371 (40%)
Mtmr3XP_006514908.1 PH-GRAM_MTMR3 23..116 CDD:270149 27/116 (23%)
PTP-MTMR3 169..485 CDD:350434 122/315 (39%)
FYVE_MTMR3 1113..1182 CDD:277271
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846069
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4471
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D824298at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.750

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