DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mtm and Mtmr4

DIOPT Version :9

Sequence 1:NP_001285651.1 Gene:mtm / 33845 FlyBaseID:FBgn0025742 Length:619 Species:Drosophila melanogaster
Sequence 2:NP_001099297.4 Gene:Mtmr4 / 287607 RGDID:1310306 Length:1191 Species:Rattus norvegicus


Alignment Length:585 Identity:203/585 - (34%)
Similarity:297/585 - (50%) Gaps:114/585 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 PFGYLEGEEDQDQKNDVTYVCPYRGPVFGAL-TITNYRLYFRSLPLRDQEPPVVVDVPLGVIARV 109
            ||..|:||..:           :.|....|| .|:||||:.:   .:|.    |::|||.:|..|
  Rat    33 PFTVLQGEGVE-----------FLGRAADALIAISNYRLHIK---FKDS----VINVPLRMIDSV 79

  Fly   110 EKIGGATSRGENSYGIEIFCKDMRNLR-----FAHKQQNHSRRTVFEKLQANAFPLSYSGRLFAF 169
            |        ..:.:.:.|.|||.:.:|     |...|:..||.:     :|.|.|..... ||||
  Rat    80 E--------SRDMFQLHIACKDSKVVRCHFSTFKQCQEWLSRLS-----RATARPAKPED-LFAF 130

  Fly   170 AHAAANSVNGNGGWDGWA-----------VYEP--------LAELRRLGVP-NDMWRATKLNESY 214
            |:.|            |.           :.:|        .|||.|:|.. .::||.:.:|.:|
  Rat   131 AYHA------------WCLGLTEEDQHTHLCQPGEHIRCRQEAELARMGFDLQNVWRVSHINSNY 183

  Fly   215 AICDSYPAVWAVPKAASDDFLRRVAQFRSRCRLPVLSWMNPRTQATITRCSQPLVGVSGKRNSDD 279
            .:|.|||....||...:|..|..||.|||..|:||:.:.:.|..|.|.|||||.:...|.||:||
  Rat   184 KLCPSYPQKLLVPVWITDKELENVASFRSWKRIPVVVYRHLRNGAAIARCSQPEISWWGWRNADD 248

  Fly   280 EAYLSFI-----------------------------------------MEANAQSDKLTIMDARP 303
            |..::.|                                         :|:.|...||.|:|||.
  Rat   249 EYLVTSIAKACALDPGTRASGGSLSAGTNDASEACDTDFDSSLTACSGVESTAAPQKLLILDARS 313

  Fly   304 SANAIANKAKGGGYESEDAYKNVEINFLDIHNIHVMRESLRKVKEACFPTTDDSKWQTAIDNTLW 368
            ...|:||:|||||.|.|:.|.|.|:.|:.:.|||.:|.|.:.::..|....|.|.|.:|:::|.|
  Rat   314 YTAAVANRAKGGGCECEEYYPNCEVVFMGMANIHAIRNSFQYLRAVCSQMPDPSNWLSALESTKW 378

  Fly   369 LKHIRCILAGAVRIVDKVETMSTSVVVHCSDGWDRTAQLTALSMLLLDPHYRTVRGFEVLIEKEW 433
            |:|:..:|..||.:.:.|:.....|:||||||||||.|:.||:.:||||:|||:.||:||:|.:|
  Rat   379 LQHLSVMLKAAVLVANTVDREGRPVLVHCSDGWDRTPQIVALAKILLDPYYRTLEGFQVLVESDW 443

  Fly   434 LSFGHKFQQRIGHGDNKHSDADRSPVFLQFIDSVWQVSQQFNNAFEFNEHFLITIVDHLYSCRFG 498
            |.|||||..|.||.:|.....::.|||||::|||.|:.:||...|||||.||:.:|.|.|||.:|
  Rat   444 LDFGHKFGDRCGHQENAEDQNEQCPVFLQWLDSVHQLLKQFPCLFEFNEAFLVKLVQHTYSCLYG 508

  Fly   499 TFLCNTEAERVAEDLKHKTTSLWTHINSSLDQYLNPLFPSFTHGAELVLRPIASVRSVRLWKGLY 563
            |||.|...||...::..:|.|:|..:.:....:.|.|   :|.|:::||.|:..||::.||..:|
  Rat   509 TFLANNPCEREKRNIYKRTCSVWALLRAGNKNFHNFL---YTPGSDMVLHPVCHVRALHLWTAVY 570

  Fly   564  563
              Rat   571  570

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mtmNP_001285651.1 PH-GRAM_MTMR2_insect-like 57..159 CDD:270164 27/107 (25%)
Myotub-related 184..509 CDD:399535 148/385 (38%)
Mtmr4NP_001099297.4 PH-GRAM_MTMR4 23..136 CDD:270150 39/146 (27%)
Myotub-related 127..519 CDD:284109 154/403 (38%)
FYVE_MTMR4 1107..1166 CDD:277272
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166349515
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4471
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D824298at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.750

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