DRSC/TRiP Functional Genomics Resources

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Protein Alignment H2.0 and nkx6.3

DIOPT Version :10

Sequence 1:NP_523488.2 Gene:H2.0 / 33841 FlyBaseID:FBgn0001170 Length:418 Species:Drosophila melanogaster
Sequence 2:NP_001159612.1 Gene:nkx6.3 / 558978 ZFINID:ZDB-GENE-070810-7 Length:272 Species:Danio rerio


Alignment Length:125 Identity:49/125 - (39%)
Similarity:64/125 - (51%) Gaps:18/125 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   271 NGAHGHGGGNGQGNASAGSN----GKRKRSWSRAVFSNLQRKGLEIQFQQQKYITKPDRRKLAAR 331
            :|.:...|...|...:.|.|    ||:|.  :|..||..|...||..|:|.||:..|:|.:||..
Zfish   125 DGGYEWRGARQQCGNNMGHNPENVGKKKH--TRPTFSGHQIFALEKTFEQTKYLAGPERARLAYS 187

  Fly   332 LNLTDAQVKVWFQNRRMKWRHTRENLKSGQEKQPSAVPESGGVFKTSTPSGDGTPQEALD 391
            |.:|::||||||||||.|||.     ||..|  ||:...|.|     ..:|||:..|..|
Zfish   188 LGMTESQVKVWFQNRRTKWRK-----KSATE--PSSTQTSRG-----ESAGDGSENEVED 235

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
H2.0NP_523488.2 Homeodomain 292..352 CDD:459649 30/59 (51%)
nkx6.3NP_001159612.1 Homeodomain 150..208 CDD:459649 30/59 (51%)

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