DRSC/TRiP Functional Genomics Resources

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Protein Alignment H2.0 and ro

DIOPT Version :10

Sequence 1:NP_523488.2 Gene:H2.0 / 33841 FlyBaseID:FBgn0001170 Length:418 Species:Drosophila melanogaster
Sequence 2:NP_524521.1 Gene:ro / 43234 FlyBaseID:FBgn0003267 Length:350 Species:Drosophila melanogaster


Alignment Length:410 Identity:103/410 - (25%)
Similarity:149/410 - (36%) Gaps:144/410 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 DPVNVDHELPTKESCASTTIVSTSPTSATSTTKVKLSFSVDRLLGSEPEESHRQSSSSPSTKSCC 101
            ||:            |:|||:|. |...:|..:.     .:||.|      |.::.||       
  Fly    24 DPI------------ANTTILSV-PQRPSSPRQF-----FERLYG------HLETRSS------- 57

  Fly   102 DGSILACCSFPHCFSQANAESRRFGHATLPPTF-TPTSSH----TYPFVGLDKLFPGPYMDYKSV 161
                            .|.|.....||..||.. ||..|.    :.|.:.:.        |.::.
  Fly    58 ----------------ENGEIDVGTHAHKPPPCDTPYHSDGGSVSSPDISIS--------DERTS 98

  Fly   162 LRPTPIRAAEHAAPTYPTLATNALLRFHQHQKQQHQQHHHHQHHPKHLHQQHKPPPHNSTTASAL 226
            |...|.......|..||           ||..|||||||||.|||..|                 
  Fly    99 LAAYPAYDFYGHAKDYP-----------QHPSQQHQQHHHHHHHPPQL----------------- 135

  Fly   227 LAPLHSLTSLQLTQQQQRFLGKTPQQLLDIAPTSPAAAAAATSQNGAHGH---GGGNGQGNASAG 288
               :|                   |:|..::|  |.|.||..:.|....|   .|.....:.|||
  Fly   136 ---VH-------------------QKLSYVSP--PPAIAAGGAANPVLPHAFPAGFPSDPHFSAG 176

  Fly   289 ----------SNGKRKRSWSRAVFSNLQRKGLEIQFQQQKYITKPDRRKLAARLNLTDAQVKVWF 343
                      ..|:::|  .|..||..|...||::|.:.:||::..|.:||..|.||:.|:|:||
  Fly   177 FSAFLARRRRKEGRQRR--QRTTFSTEQTLRLEVEFHRNEYISRSRRFELAETLRLTETQIKIWF 239

  Fly   344 QNRRMKWRHTRENLKSGQEKQ--PSAVPESG------GVFKTSTPSGDGTPQEA----LDYSSDS 396
            ||||.|    .:.::..|..|  .:.|..:|      |...|:.|.|..|...|    |:|.:.:
  Fly   240 QNRRAK----DKRIEKAQIDQHYRNFVVANGFMSSIMGQAATTMPPGGVTGGVAVGVGLNYYAAA 300

  Fly   397 CSSVDLSEQADEDDN-IEIN 415
            .:...|.:...:|.| |:|:
  Fly   301 ATPAALPKDNTQDANFIDID 320

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
H2.0NP_523488.2 Homeodomain 292..352 CDD:459649 25/59 (42%)
roNP_524521.1 Homeodomain 196..248 CDD:459649 23/55 (42%)

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