DRSC/TRiP Functional Genomics Resources

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Protein Alignment H2.0 and Dlx3

DIOPT Version :10

Sequence 1:NP_523488.2 Gene:H2.0 / 33841 FlyBaseID:FBgn0001170 Length:418 Species:Drosophila melanogaster
Sequence 2:NP_001099302.1 Gene:Dlx3 / 287638 RGDID:1304875 Length:287 Species:Rattus norvegicus


Alignment Length:117 Identity:42/117 - (35%)
Similarity:64/117 - (54%) Gaps:12/117 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   290 NGKRKR-SWSRAVFSNLQRKGLEIQFQQQKYITKPDRRKLAARLNLTDAQVKVWFQNRRMKWRHT 353
            |||.|: ...|.::|:.|...|:.:||:.:|:..|:|.:|||:|.||..|||:||||||.|::..
  Rat   123 NGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIWFQNRRSKFKKL 187

  Fly   354 RENLKSGQEKQPS-------AVPESGGVFKT---STPSGDGTP-QEALDYSS 394
            .:|.:...|..|:       ..|.|..::.|   |||:....| ...|.||:
  Rat   188 YKNGEVPLEHSPNNSDSMACNSPPSPALWDTSSHSTPAPTRNPLPPPLPYSA 239

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
H2.0NP_523488.2 Homeodomain 292..352 CDD:459649 27/60 (45%)
Dlx3NP_001099302.1 DLL_N 27..107 CDD:463567
COG5576 <109..230 CDD:227863 38/106 (36%)
Homeodomain 130..186 CDD:459649 25/55 (45%)
Blue background indicates that the domain is not in the aligned region.

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