DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment H2.0 and ceh-54

DIOPT Version :9

Sequence 1:NP_523488.2 Gene:H2.0 / 33841 FlyBaseID:FBgn0001170 Length:418 Species:Drosophila melanogaster
Sequence 2:NP_001338798.1 Gene:ceh-54 / 188474 WormBaseID:WBGene00020485 Length:221 Species:Caenorhabditis elegans


Alignment Length:127 Identity:34/127 - (26%)
Similarity:62/127 - (48%) Gaps:25/127 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   290 NGKRKRSWSRAVFSNLQRKGLEIQFQQQKYITKPDRRKLAARLNLTDAQVKVWFQNRRMKWRHTR 354
            |..||:. :|..|...|...:|..|.:.:|.....|.|||.::.|.:.:|::||||||.|:|  |
 Worm    41 NPDRKKR-NRITFDANQIDEMEKVFAENQYPDTMSREKLANKIQLHEERVQIWFQNRRAKYR--R 102

  Fly   355 ENLKSGQEKQPSAVPESGGVFKTSTPSGD-------------GTPQEALDYSSDSCSSVDLS 403
            |..::|...:|.::        |..|:|:             .:|..: :.|:|:..|::::
 Worm   103 EQKQTGHPYEPPSI--------TKNPTGEKEKTQDCTTLTSASSPGPS-NLSNDTLVSIEMA 155

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
H2.0NP_523488.2 Homeobox 298..351 CDD:278475 19/52 (37%)
ceh-54NP_001338798.1 Homeobox 49..102 CDD:365835 20/54 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.