DRSC/TRiP Functional Genomics Resources

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Protein Alignment H2.0 and cog-1

DIOPT Version :9

Sequence 1:NP_523488.2 Gene:H2.0 / 33841 FlyBaseID:FBgn0001170 Length:418 Species:Drosophila melanogaster
Sequence 2:NP_001022264.1 Gene:cog-1 / 175149 WormBaseID:WBGene00000584 Length:256 Species:Caenorhabditis elegans


Alignment Length:341 Identity:83/341 - (24%)
Similarity:123/341 - (36%) Gaps:106/341 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 TIVSTSPTSATS-------TTKVKLSFSVDRLLGSEPEESHRQSSSSPSTKSCCDGSILACCSFP 112
            :::.:.|...|:       ..|...::|:..||..:.|       ||||..|..|.|        
 Worm     2 SLIMSEPPQLTTPDDKDVENRKHSSTYSISNLLLEKKE-------SSPSGSSSEDDS-------- 51

  Fly   113 HCFSQANAESRRFGHATLPPTFTPTSSHTYPFVGLDKLFPGPYMDYKSVLRPTPIRA--AEHAAP 175
               :.:|.:.:|...||....|.|.||.:               ..:|...||.|.|  ..:...
 Worm    52 ---ASSNDDDQRSPSATSSFIFPPASSSS---------------SSESATSPTQIMAQLMANGGA 98

  Fly   176 TYPTLATNALLRFHQHQKQQHQQHHHHQHHPKHLHQQHKPPPHNSTTASALLAPLHSLTSLQLTQ 240
            ..|.|..    .|...|.|.:.|           ...::....|.:.|         |||..|  
 Worm    99 VDPGLQA----YFFLLQSQLNSQ-----------SMMNRVTQENVSRA---------LTSFNL-- 137

  Fly   241 QQQRFLGKTPQQLLDIAPTSPAAAAAATSQNGAHGHGGGNGQGNASAGSNGKRKRSWSRAVFSNL 305
                 |...|..|..::|......:...|.|..                |.::|:  ||..|:..
 Worm   138 -----LNNLPGALPSLSPMGRLQHSMQLSPNSL----------------NMQKKQ--SRPTFTGH 179

  Fly   306 QRKGLEIQFQQQKYITKPDRRKLAARLNLTDAQVKVWFQNRRMKWRHTRENLKSGQEKQPSAVPE 370
            |...||.:|:|.||:...||.:||..||::::||||||||||.|||.        :|...:|:.:
 Worm   180 QIYQLERKFEQTKYLAGADRAQLAQELNMSESQVKVWFQNRRTKWRK--------KEAADNALVK 236

  Fly   371 SGGVFKTSTPSGDGTP 386
            .|.       |||.:|
 Worm   237 RGA-------SGDKSP 245

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
H2.0NP_523488.2 Homeobox 298..351 CDD:278475 27/52 (52%)
cog-1NP_001022264.1 Homeobox 172..226 CDD:365835 28/53 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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