DRSC/TRiP Functional Genomics Resources

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Protein Alignment H2.0 and Hoxa3

DIOPT Version :10

Sequence 1:NP_523488.2 Gene:H2.0 / 33841 FlyBaseID:FBgn0001170 Length:418 Species:Drosophila melanogaster
Sequence 2:NP_034582.1 Gene:Hoxa3 / 15400 MGIID:96175 Length:443 Species:Mus musculus


Alignment Length:327 Identity:72/327 - (22%)
Similarity:108/327 - (33%) Gaps:107/327 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    80 LGSEPEESHRQSSSSPSTKSCCDGSILACCSFPHCFSQANAESRRFGHATLPPTFTPTSSHTYPF 144
            ||::..|.||.:.|..|..|                :..:.::.....|.|.....|.|..  |.
Mouse    39 LGTDGVEYHRPACSLQSPAS----------------AGGHPKTHELSEACLRTLSGPPSQP--PG 85

  Fly   145 VGLDKLFPGPYMDYKSVLRPTPIRAAEHAAPTYPTLATNALLRFHQHQKQQHQQHHHHQHHPKHL 209
            :|...|.|.|                ..|||..|                               
Mouse    86 LGEPPLPPPP----------------PQAAPPAP------------------------------- 103

  Fly   210 HQQHKPPPHNSTTASALLAPLHSLTSLQLTQQQQRFLGKTPQQLLDIAPTSPAAAAAA------- 267
             |..:|||.......|...|..|:               :|.|..:..|| ||:.|.:       
Mouse   104 -QPPQPPPQPPAPTPAAPPPPSSV---------------SPPQSANSNPT-PASTAKSPLLNSPT 151

  Fly   268 ----------TSQNGAHGHGGGNGQGNASAGSN---GKRKRSWSRAVFSNLQRKGLEIQFQQQKY 319
                      .|:........|:..|.:.||..   |:.....:|..:::.|...||.:|...:|
Mouse   152 VGKQIFPWMKESRQNTKQKTSGSSSGESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRY 216

  Fly   320 ITKPDRRKLAARLNLTDAQVKVWFQNRRMKWRHTRE-----NLKSGQEKQPSAVPESGGVFKTST 379
            :.:|.|.::|..||||:.|:|:||||||||::..::     ....||....|.||...|.:..|.
Mouse   217 LCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSM 281

  Fly   380 PS 381
            .|
Mouse   282 HS 283

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
H2.0NP_523488.2 Homeodomain 292..352 CDD:459649 23/59 (39%)
Hoxa3NP_034582.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 74..151 25/142 (18%)
Antp-type hexapeptide 156..161 0/4 (0%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 163..197 6/33 (18%)
COG5576 <182..309 CDD:227863 33/102 (32%)
Homeodomain 193..249 CDD:459649 23/55 (42%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 248..354 8/36 (22%)
DUF4074 378..441 CDD:463833
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 401..443
Blue background indicates that the domain is not in the aligned region.

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