DRSC/TRiP Functional Genomics Resources

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Protein Alignment H2.0 and Gsx1

DIOPT Version :9

Sequence 1:NP_523488.2 Gene:H2.0 / 33841 FlyBaseID:FBgn0001170 Length:418 Species:Drosophila melanogaster
Sequence 2:NP_032204.1 Gene:Gsx1 / 14842 MGIID:95842 Length:261 Species:Mus musculus


Alignment Length:351 Identity:84/351 - (23%)
Similarity:125/351 - (35%) Gaps:116/351 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 SFSVDRLLGSEPEESHRQSSSSPSTKSCCDGSILACCSFPHCFSQANAESRRFGHATLPPTFTPT 137
            ||.||.|:..|..:......|.|..             ||:               .:||   |.
Mouse     4 SFLVDSLVLREASDKKAPEGSPPPL-------------FPY---------------AVPP---PH 37

  Fly   138 SSHTYPFVGLDKLFPGPYMDYKSVLR---PTPIRAAE-HAAPTYPTLATNALLR--FHQHQKQQH 196
            :.|     ||.   ||.....|:.|.   |..:.|:: |..|..|.|   .||:  |.....|  
Mouse    38 ALH-----GLS---PGACHARKAGLLCVCPLCVTASQLHGPPGPPAL---PLLKASFPPFGSQ-- 89

  Fly   197 QQHHHHQHHPKHLHQQHKPPP--HNSTTASALLAPLHSLTSLQLTQQQQRFLGKTPQQLLDIAPT 259
                 :.|.|  |.:||...|  .:...|:|..|.|:. ||..|..         |:|...|   
Mouse    90 -----YCHAP--LGRQHSVSPGVAHGPAAAAAAAALYQ-TSYPLPD---------PRQFHCI--- 134

  Fly   260 SPAAAAAATSQNGAHGHGGGNGQGNASAGSNGKRKRSWSRAVFSNLQRKGLEIQFQQQKYITKPD 324
                                    :..:.||........|..|::.|...||.:|....|:::..
Mouse   135 ------------------------SVDSSSNQLPSSKRMRTAFTSTQLLELEREFASNMYLSRLR 175

  Fly   325 RRKLAARLNLTDAQVKVWFQNRRMKWRHTRENLKSGQEKQPSAVPESGGVFKTSTPSGDGTPQEA 389
            |.::|..|||::.|||:||||||:|  |.:|...|...         ||   ....:|.|.||..
Mouse   176 RIEIATYLNLSEKQVKIWFQNRRVK--HKKEGKGSNHR---------GG---AGAGAGGGAPQGC 226

  Fly   390 LDYSSDSCSSVDLSEQADEDDNIEIN 415
                  .|||:..::.:::||.:.::
Mouse   227 ------KCSSLSSAKCSEDDDELPMS 246

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
H2.0NP_523488.2 Homeobox 298..351 CDD:278475 22/52 (42%)
Gsx1NP_032204.1 SNAG domain. /evidence=ECO:0000250 1..20 6/15 (40%)
Homeobox 150..203 CDD:395001 23/54 (43%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 201..261 14/64 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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