DRSC/TRiP Functional Genomics Resources

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Protein Alignment H2.0 and Msx3

DIOPT Version :10

Sequence 1:NP_523488.2 Gene:H2.0 / 33841 FlyBaseID:FBgn0001170 Length:418 Species:Drosophila melanogaster
Sequence 2:NP_446164.1 Gene:Msx3 / 114504 RGDID:620932 Length:204 Species:Rattus norvegicus


Alignment Length:103 Identity:31/103 - (30%)
Similarity:53/103 - (51%) Gaps:4/103 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly   299 RAVFSNLQRKGLEIQFQQQKYITKPDRRKLAARLNLTDAQVKVWFQNRRMKWRHTRENLKSGQEK 363
            |..|:..|...||.:|.|::|::..:|.:.::.|:||:.|||:||||||.|.:..:|   :..||
  Rat    91 RTPFTTAQLLALERKFHQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQE---AELEK 152

  Fly   364 -QPSAVPESGGVFKTSTPSGDGTPQEALDYSSDSCSSV 400
             :.:|.|.....|....|.|......|..:..::...:
  Rat   153 LKLTAKPLLPAAFALPFPLGTQLHSSAATFGGNAVPGI 190

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
H2.0NP_523488.2 Homeodomain 292..352 CDD:459649 22/52 (42%)
Msx3NP_446164.1 Homeodomain 88..144 CDD:459649 22/52 (42%)

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