DRSC/TRiP Functional Genomics Resources

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Protein Alignment H2.0 and Hoxa1

DIOPT Version :10

Sequence 1:NP_523488.2 Gene:H2.0 / 33841 FlyBaseID:FBgn0001170 Length:418 Species:Drosophila melanogaster
Sequence 2:NP_037207.2 Gene:Hoxa1 / 103690132 RGDID:11414885 Length:334 Species:Rattus norvegicus


Alignment Length:392 Identity:94/392 - (23%)
Similarity:137/392 - (34%) Gaps:137/392 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 DHELPTKESCASTTIVSTSPTSATSTTKVKLSFSVDRLLG-------SEPEESHRQSSSSPSTKS 99
            ||.:.|.:|||         .||.|..      ..||.||       |.....|......|:|  
  Rat    31 DHGITTFQSCA---------VSANSCG------GDDRFLGGRGVQITSPHHHHHHHHHPQPAT-- 78

  Fly   100 CCDGSILACCSFPHCFSQANAESRRFGHATLPPTFTPTSSHTYPFVGLDKLFPGPYMDYKSVLRP 164
                           :..:......:.|::..|::...:            |..||       .|
  Rat    79 ---------------YQTSGNLGVSYSHSSCGPSYGAQN------------FSAPY-------GP 109

  Fly   165 TPIRAAEHAAPTYPTLATNALLRFHQHQKQQHQQHHHHQHH-------PKHLH----QQHKPPPH 218
            ..:......:..||..|.............||  |||||.:       |:::|    |:|:    
  Rat   110 YGLNQEADVSGGYPPCAPAVYSGNLSSPMVQH--HHHHQGYAGGTVGSPQYIHHSYGQEHQ---- 168

  Fly   219 NSTTASALLAPLHSLTSLQLTQQQQRFLGKTPQQLLDIAPTSPAAAAAATSQ------------- 270
                :.||....:||:.|..:.|:              |..|||:..::.:|             
  Rat   169 ----SLALATYNNSLSPLHASHQE--------------ACRSPASETSSPAQTFDWMKVKRNPPK 215

  Fly   271 NGAHGHGGGNGQGNASAGSNGKRKRSWSRAVFSNLQRKGLEIQFQQQKYITKPDRRKLAARLNLT 335
            .|..|..|..||.||            .|..|:..|...||.:|...||:|:..|.::||.|.|.
  Rat   216 TGKVGEYGYVGQPNA------------VRTNFTTKQLTELEKEFHFNKYLTRARRVEIAASLQLN 268

  Fly   336 DAQVKVWFQNRRMKWRHTRENLKSGQEKQPSAVPESGGVFKTS--TPSG-DGTPQEALDYSSDSC 397
            :.|||:||||||||           |:|:     |..|:...|  ||.| |...:|:.:.||.|.
  Rat   269 ETQVKIWFQNRRMK-----------QKKR-----EKEGLLPISPATPPGSDEKTEESSEKSSSSP 317

  Fly   398 SS 399
            |:
  Rat   318 SA 319

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
H2.0NP_523488.2 Homeodomain 292..352 CDD:459649 25/59 (42%)
Hoxa1NP_037207.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 61..82 4/37 (11%)
Interaction with OGT. /evidence=ECO:0000250|UniProtKB:P09022 74..202 32/187 (17%)
COG5576 175..>285 CDD:227863 42/146 (29%)
Antp-type hexapeptide 203..208 0/4 (0%)
Homeodomain 232..285 CDD:459649 26/63 (41%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 280..334 17/56 (30%)

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