DRSC/TRiP Functional Genomics Resources

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Protein Alignment H2.0 and six4

DIOPT Version :9

Sequence 1:NP_523488.2 Gene:H2.0 / 33841 FlyBaseID:FBgn0001170 Length:418 Species:Drosophila melanogaster
Sequence 2:XP_002933781.2 Gene:six4 / 100498150 XenbaseID:XB-GENE-481699 Length:817 Species:Xenopus tropicalis


Alignment Length:109 Identity:32/109 - (29%)
Similarity:45/109 - (41%) Gaps:12/109 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   302 FSNLQRKGLEIQFQQQKYITKPDRRKLAARLNLTDAQVKVWFQNRRMKWRHTRENLKSGQEKQPS 366
            |....|..|:..::..:|.:...:|.||....|:..||..||:|||.:.|:..|    .|.|.  
 Frog   272 FKEKSRNALKELYKHNRYPSPAAKRNLAKVTGLSLTQVSNWFKNRRQRDRNPSE----AQSKS-- 330

  Fly   367 AVPESGGVFKTSTPSGDGTPQ---EALDYSSDSCSSVDLSEQAD 407
               ||.|...|...|..|...   ..|..|||..|:::....||
 Frog   331 ---ESDGNHSTEDESSKGQDDLSPHPLSNSSDGVSNINPLGPAD 371

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
H2.0NP_523488.2 Homeobox 298..351 CDD:278475 15/48 (31%)
six4XP_002933781.2 SIX1_SD 150..259 CDD:374862
homeodomain 270..324 CDD:238039 16/51 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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