DRSC/TRiP Functional Genomics Resources

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Protein Alignment H2.0 and lhx6

DIOPT Version :9

Sequence 1:NP_523488.2 Gene:H2.0 / 33841 FlyBaseID:FBgn0001170 Length:418 Species:Drosophila melanogaster
Sequence 2:XP_002941184.1 Gene:lhx6 / 100493242 XenbaseID:XB-GENE-493341 Length:389 Species:Xenopus tropicalis


Alignment Length:126 Identity:33/126 - (26%)
Similarity:53/126 - (42%) Gaps:27/126 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   280 NGQGNASAGSNGKRKRSW------SRAVFSNLQRKGLEIQFQQQKYITKPDR---RKLAARLNLT 335
            ||.|....|:....:.|.      :|..|:..|.:.::.||.|.   ..||.   :|||....|:
 Frog   224 NGNGITLEGAVPSEQDSQPKPAKRARTSFTAEQLQVMQAQFAQD---NNPDAQTLQKLADMTGLS 285

  Fly   336 DAQVKVWFQNRRMKW-RHTRENLKSGQEKQPSAVPESGGVFKTSTPSGD------GTPQEA 389
            ...::|||||.|.:. :||.::....|...|:.:        ||:.|.|      .:|:.|
 Frog   286 RRVIQVWFQNCRARHKKHTPQHGVPPQGPTPTRI--------TSSLSDDLHFSPFNSPERA 338

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
H2.0NP_523488.2 Homeobox 298..351 CDD:278475 18/56 (32%)
lhx6XP_002941184.1 LIM1_Lhx6 96..149 CDD:188766
LIM2_Lhx6 157..211 CDD:188768
Homeobox 249..302 CDD:365835 18/55 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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