DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9098 and Sh2d3c

DIOPT Version :9

Sequence 1:NP_608979.2 Gene:CG9098 / 33840 FlyBaseID:FBgn0031762 Length:944 Species:Drosophila melanogaster
Sequence 2:NP_001102049.1 Gene:Sh2d3c / 362111 RGDID:1307287 Length:853 Species:Rattus norvegicus


Alignment Length:947 Identity:284/947 - (29%)
Similarity:407/947 - (42%) Gaps:197/947 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    77 TDKELKQFGVRGAHRQRMVNSLLGVRAKRRQSMNLEAMSSAPRAVPRRKNSCP-----------L 130
            |.|:.|.|..:|          ||..:...:|.:|...|::|..     .|||           |
  Rat     8 TGKKFKFFKFKG----------LGSLSNLPRSFSLRRSSASPSI-----RSCPEPDTFEATQDDL 57

  Fly   131 VYLGENPQDMAGSGD--SGPGVITTKS-GKVLKQLTFDETSTIYEE--LRPRSKCNSPHWAIEDS 190
            |.|.::|...|.|.|  |..|.:...: .|..||....:...:..|  |..|.....|.:.....
  Rat    58 VTLPKSPPAYARSSDMYSHMGTMPRPNIKKAQKQKAVQKAQEVSRESHLVSRGLPEPPDFEAAKE 122

  Fly   191 RMEGYGSSNATTPLATAQPSPSE------------------------------QQEAIA------ 219
            ..:|     ..|||....||..|                              :.||..      
  Rat   123 AEKG-----TETPLEDTTPSAVEVDPMRKLAGLTVDTAEKQIPGDAYPERAAAELEAAGDYVKFS 182

  Fly   220 ------------LKKALEWELSLDARELRSHAWYHGALPRQRAEEIVQREGDFLVRDCASQPDNY 272
                        |.|.||.||.|.:.:|||||||||.:||:.:|.:|||.||||:||..:...:|
  Rat   183 KEKYILDSSPEKLHKELEEELKLSSTDLRSHAWYHGRIPREVSETLVQRNGDFLIRDSLTSLGDY 247

  Fly   273 VLSCRSKAAVLHFVLNKLVLQPETVYERVQYQFEEDAFDTVPDLITFYVGSGKPISSASGALIQF 337
            ||:||.....|||.:||:|::....|..::|.||:::||.||.|:.::|||.|.:|..|||:|..
  Rat   248 VLTCRWHNQTLHFKINKVVVEAGESYTHIRYLFEQESFDHVPALVRYHVGSRKAVSEQSGAIIYC 312

  Fly   338 PCNRTYPLSFYGHKIVGNQLHTQMLAGLRGLSPLNSPMGSNGAVGAGMNATFRFEPQQQQQQQLS 402
            |.|||:||.:              |....|||                              |.|
  Rat   313 PVNRTFPLRY--------------LEASYGLS------------------------------QGS 333

  Fly   403 PMAGSPASPHCSPPRA----RREVPPPPRLPCKKQQRSQSLTPAQAMLVSNINKLQEQQLQMQEL 463
            ..|.|||||  |.|:.    ||.|.....|...|..|... .|....|....:.::...|.|.::
  Rat   334 SKAASPASP--SGPKGSHMKRRSVTMTDGLTSDKVTRGDG-CPNSTSLPHPRDSIRNCALSMDQI 395

  Fly   464 ENGNGNGIMRFQTIARCNPTSEQHLESKFTT----HSLPRPNTSAAHALRQQA--VARISSLARN 522
            .:.:          :..:|.||......::|    |:     .|||....|.|  |||.||..:.
  Rat   396 PDLH----------SPLSPISESPSSPAYSTVTRVHA-----ASAAPCTAQPASPVARRSSEPQL 445

  Fly   523 CSLDSPSDSRPPSPPPKPRKEPMAAV--LAYQASGSDSGNGSGDSALGDACEAS-----VQRGVI 580
            |    |..:  |.||.:..:.|.|:.  ...:||.|.|.:...|...|..|:..     .:....
  Rat   446 C----PGGA--PKPPGESDRGPHASPSHTLCKASPSPSLSSYSDPDSGHYCQLQPPVRCSREPTA 504

  Fly   581 IKNPRFMTTSVSNGTLKSFTEFDVLAAE-EELFTMAIEEVKTASKFDFENFVTLLLPSVENKPLD 644
            .:.||...:|...  .|..:|..|...| .:.||..:.|  ..|.|:...|.:.|:|. ||:||:
  Rat   505 GETPRKARSSAER--QKELSENGVPEGEWGKTFTAPVAE--ATSSFNLATFQSQLIPK-ENRPLE 564

  Fly   645 GDALNTFKMMLLETGPKLLAEHITRID--IALFLEEPSNEEDYYLSCSGLELLTLPHGKVFREDI 707
            ...|...|.:|.|...:.||.|:|::|  :|..|......:.......|:||||||||:..|:|:
  Rat   565 VGLLRKVKELLSEVDARTLARHVTKVDCLVARILGVTKEMQTLMGVRWGMELLTLPHGRQLRQDL 629

  Fly   708 IERTQCIKLMVAVTILTCQTDL-DRAQLLSKWIQIAVETKTALGNLFGFCAIMLGLCMQQIQKLD 771
            :||...:.:|:||.||.|.... :||.||.|.||:|.|.:..:||:|.|.|:|..|.|.||.:|:
  Rat   630 LERFHTMSIMLAVDILGCTGSAEERAALLHKTIQLAAELRGTMGNMFSFAAVMGALEMAQISRLE 694

  Fly   772 QAWHILRQQYTDSAFTFEAKLRPTLSIMNEA-SNPQAPNTTVPHVLLYALLIDRPVMDIINHSNI 835
            |.|..|||::|:.|..:|.||:|.|..:||. ..|...|||.||||.:..|::           .
  Rat   695 QTWMTLRQRHTEGAILYEKKLKPFLKSLNEGKEGPPLSNTTFPHVLPFITLLE-----------C 748

  Fly   836 DDRPALYHTCIAPWESKADDFGMTINFQHLDASRGFLKNLELYRKNAKIILEDASPRLDELLADA 900
            |..||   ....||.|  .:.|:.:...||:|:|....:..||..||::.|:....| .||| :.
  Rat   749 DSAPA---EGPEPWGS--TEHGVEVVLAHLEAARTVAHHGGLYHTNAEVKLQGFQAR-PELL-EV 806

  Fly   901 FRTEFHVKFLWGSSGATAKAEDRHNKLEKVLTLMADK 937
            |.|||.::.||||.||.:....|:.|.:||||.::.|
  Rat   807 FSTEFQMRLLWGSQGANSSQAWRYEKFDKVLTALSHK 843

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9098NP_608979.2 SAM_1 43..102 CDD:278937 7/24 (29%)
SAM 47..103 CDD:197735 7/25 (28%)
SH2_BCAR3 233..367 CDD:198200 57/133 (43%)
RasGEF 660..>797 CDD:295324 57/139 (41%)
Sh2d3cNP_001102049.1 SH2_BCAR3 208..342 CDD:198200 66/177 (37%)
RasGEF 578..>755 CDD:295324 72/190 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166354088
Domainoid 1 1.000 102 1.000 Domainoid score I6681
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 302 1.000 Inparanoid score I2591
OMA 1 1.010 - - QHG49555
OrthoDB 1 1.010 - - D138275at2759
OrthoFinder 1 1.000 - - FOG0003062
OrthoInspector 1 1.000 - - otm44396
orthoMCL 1 0.900 - - OOG6_108941
Panther 1 1.100 - - O PTHR14247
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2423
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1312.910

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