DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gal and glb1l

DIOPT Version :9

Sequence 1:NP_608978.2 Gene:Gal / 33839 FlyBaseID:FBgn0001089 Length:672 Species:Drosophila melanogaster
Sequence 2:NP_001015958.1 Gene:glb1l / 548712 XenbaseID:XB-GENE-964696 Length:648 Species:Xenopus tropicalis


Alignment Length:614 Identity:251/614 - (40%)
Similarity:347/614 - (56%) Gaps:48/614 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 FTIDHEANTFMLDGQPFRYVSGSFHYFRAVPESWRSRLRTMRASGLNALDTYVEWSLHNPHDGEY 110
            |.||.|.|.|..|||||||:|||.||.|.....|:.||..|:.:||:|:.|||.|:.|....|.|
 Frog    30 FEIDFEHNCFRKDGQPFRYISGSIHYSRVPQYYWKDRLLKMKMAGLDAIYTYVPWNFHETKPGVY 94

  Fly   111 NWEGIADVVKFLEIAQEEDFYIILRPGPYICAERDNGGLPHWLFTKYPSIKMRTNDPNYISEVGK 175
            |:.|..|:..||::|.|....:|||.|||||||.|.||||.||..| .||.:|::||:|:..|..
 Frog    95 NFSGDHDIESFLKLANEIGLLVILRAGPYICAEWDMGGLPAWLLAK-ESIVLRSSDPDYLQAVDN 158

  Fly   176 WYAELMPRLQHLFVGNGGKIIMVQVENEYGDY-ACDHDYLNWLRDETEKYVSGKALLFTVDIPN- 238
            |....:|:::.....|||.||.||||||||.| .||::||..|......::..:.:|||.|... 
 Frog   159 WMGVFLPKMKPFLYHNGGPIISVQVENEYGSYFTCDYNYLRHLLQLFRHHLGDEVVLFTTDGSGL 223

  Fly   239 EKMSCGKIENVFATTDFGIDRINEIDKIWAMLRALQPTGPLVNSEFYPGWLTHWQEQNQRRDGQE 303
            :.:.||.|:.::.|.|||..  :.:.:.:::.|..:|.|||||||||.|||.||.|.:.....:.
 Frog   224 QYVRCGTIQGLYTTVDFGPG--SNVTETFSVQRYCEPKGPLVNSEFYTGWLDHWGEPHSVVATEM 286

  Fly   304 VANALRTILSYNASVNLYMFFGGTNFGFTAGANYNLDGGIGYAADITSYDYDAVMDEAGGVTTKY 368
            |..:|..||::.|:||:|||.||||||:..|||      ..||...|||||||.:.|||.:|.||
 Frog   287 VTKSLDEILAHGANVNMYMFIGGTNFGYWNGAN------TPYAPQPTSYDYDAPLSEAGDLTDKY 345

  Fly   369 NLVKAVIGEFLPLPEITLNP-AKRLAYGRVELTPKLTLLSTEGRAALSKGDPVESIKPKTFEELD 432
            ..|:.||.::..:||..:.| ..:.|||.:::....|:  ||....|:....::...|.||:::.
 Frog   346 FAVREVIKKYKQIPEGPIPPTTPKYAYGEIKMEKVKTV--TEALDILASHGAIQGTYPLTFDQMK 408

  Fly   433 LYSGLVLYETELPSMDLDPALLKI--DQINDRAHVFVDQELVGTLSREAQIYSLPLSKGWGSTLQ 495
            .|.|.|||.|.||....:|..|..  :.:.|||:|.|:....|.|.|:.|. ::.::...|:.|.
 Frog   409 QYFGFVLYRTTLPINCSNPTTLTTLSNGVQDRAYVTVNGVPQGVLERDKQT-AINVTGVAGAELD 472

  Fly   496 LLVENQGRVNF-YISNDTKGIFGEVSLQLHNGGYLPLENWRSTAFPLE-QSAVELWRREHTDEKA 558
            ||||:.||||| ..:||.||:...|:|   ||..  |.||  |.:||: .|||.           
 Frog   473 LLVESMGRVNFGRYNNDFKGLLTNVTL---NGEL--LVNW--TMYPLDIDSAVN----------- 519

  Fly   559 LDPLLARQRI----LRNGPILYTGSLTV-TEV----GDTYLNMAGWGKGVAYVNGFNLGRYWPVA 614
             ..||:...|    ..:.|:.|.|||.: |.:    .||::...||.||..::|||||||||||.
 Frog   520 -GGLLSTIHIPYASAFSAPMFYKGSLIIPTGIPDLPQDTFIQFPGWTKGQIWINGFNLGRYWPVR 583

  Fly   615 GPQVTLYVPNEILKVG-ENSLVILEYQRA 642
            |||||||||..||... .|::.:||.:.:
 Frog   584 GPQVTLYVPRSILTTTLVNNITVLELENS 612

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GalNP_608978.2 Glyco_hydro_35 54..376 CDD:279624 145/323 (45%)
BetaGal_dom4_5 <570..637 CDD:290101 35/72 (49%)
glb1lNP_001015958.1 Glyco_hydro_35 39..353 CDD:279624 145/322 (45%)
BetaGal_dom4_5 <539..607 CDD:290101 34/67 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 313 1.000 Domainoid score I1284
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 480 1.000 Inparanoid score I1430
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D179316at2759
OrthoFinder 1 1.000 - - FOG0002046
OrthoInspector 1 1.000 - - mtm9432
Panther 1 1.100 - - O PTHR23421
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1174
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.160

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