DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsp26A and tspan4b

DIOPT Version :10

Sequence 1:NP_001097093.1 Gene:Tsp26A / 33838 FlyBaseID:FBgn0031760 Length:314 Species:Drosophila melanogaster
Sequence 2:NP_001076276.1 Gene:tspan4b / 556934 ZFINID:ZDB-GENE-070410-127 Length:232 Species:Danio rerio


Alignment Length:276 Identity:73/276 - (26%)
Similarity:123/276 - (44%) Gaps:69/276 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 CCLKYLLFASNVILWLSALLVLSVGIWAWSEKGMFRNIARLHFIALDPAFVLIILGGVTFLLGFM 81
            ||:|||:|..|:|.||....:..||:|....:..|.::. |.|.:|..|.:|::.||||.:.||:
Zfish     9 CCVKYLMFVFNLIFWLGGCGLFGVGVWLAFTQSEFSSLP-LSFPSLSAANLLLVAGGVTMVTGFL 72

  Fly    82 GSVGALRENTCLLGAYAIFLSVLLIAEIGFCAVAFVLK------DKGWIKDQATEGLKAFIRHYR 140
            |.:|||:|..|||..:.:.|.:|::.|:   .:..||.      ||. .||...||:|.:.::  
Zfish    73 GCLGALKEQKCLLLTFFVILLILVLTEV---VLILVLSLYHEELDKK-AKDDLREGMKGYSKN-- 131

  Fly   141 EDADQQNLIDWIQEDW------LQCCGIDGPKDWDSNNYFNCSSIAIGSREACG-VPFSCCRRRP 198
                     |.:::.|      .:|||:....||.             ::...| :|.|||...|
Zfish   132 ---------DGLRKSWDNMQMIFKCCGVSNHTDWH-------------NKTTDGKLPGSCCSNDP 174

  Fly   199 QEVIKNKQCGYDVRKEGYPVDRNIHERGCLRAGEDWLEAHLISVAIG---CVALLVLQGMELSKI 260
                  ..|.:             .|..|....:.||..::.|| :|   |:.::.|..:..|.:
Zfish   175 ------SSCRH-------------WEEPCYEKAKQWLLTNITSV-LGFGVCIGIVQLLALVFSML 219

  Fly   261 IYEKGC-VQAGEEWME 275
            :|   | :...|::|:
Zfish   220 MY---CQILRAEKYMD 232

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp26ANP_001097093.1 Tetraspanin 19..194 CDD:459767 53/187 (28%)
TM4SF9_like_LEL 118..239 CDD:239412 26/133 (20%)
tspan4bNP_001076276.1 Tetraspanin 11..222 CDD:459767 68/262 (26%)
NET-5_like_LEL 108..196 CDD:239418 25/131 (19%)

Return to query results.
Submit another query.