DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kdm5 and atpD

DIOPT Version :10

Sequence 1:NP_523486.1 Gene:Kdm5 / 33837 FlyBaseID:FBgn0031759 Length:1838 Species:Drosophila melanogaster
Sequence 2:NP_418188.1 Gene:atpD / 948244 ECOCYCID:EG10101 Length:460 Species:Escherichia coli


Alignment Length:117 Identity:24/117 - (20%)
Similarity:50/117 - (42%) Gaps:26/117 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly  1060 YKRSQGLRETSSKLTYQDVKNLLHIAAAD-LDPTDPYVDKEMRKLQQIGAD----IEAWESQAAK 1119
            |..::|::....:  ||::|:::.|...| |...|..|....||:|:..:.    .|.:.....|
E. coli   355 YDTARGVQSILQR--YQELKDIIAILGMDELSEEDKLVVARARKIQRFLSQPFFVAEVFTGSPGK 417

  Fly  1120 Y---------FRRLTQQHELGEIEQFLKSASDINGQVPSHGLLKDALRKARE 1162
            |         |:.:.:    ||.:...:.|..:.|.:      ::|:.||::
E. coli   418 YVSLKDTIRGFKGIME----GEYDHLPEQAFYMVGSI------EEAVEKAKK 459

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kdm5NP_523486.1 JmjN 160..201 CDD:128818
ARID_JARID 226..312 CDD:350628
PHD1_Lid_like 450..495 CDD:277078
JmjC 624..740 CDD:396791
zf-C5HC2 830..882 CDD:460750
PLU-1 896..1231 CDD:462475 24/117 (21%)
PHD2_KDM5A 1295..1351 CDD:277079
PHD3_KDM5A_like 1755..1805 CDD:277083
atpDNP_418188.1 AtpD 1..460 CDD:439825 24/117 (21%)
Blue background indicates that the domain is not in the aligned region.

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