DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kdm5 and AT5G08680

DIOPT Version :10

Sequence 1:NP_523486.1 Gene:Kdm5 / 33837 FlyBaseID:FBgn0031759 Length:1838 Species:Drosophila melanogaster
Sequence 2:NP_680155.1 Gene:AT5G08680 / 830769 AraportID:AT5G08680 Length:559 Species:Arabidopsis thaliana


Alignment Length:361 Identity:64/361 - (17%)
Similarity:151/361 - (41%) Gaps:95/361 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   933 LLIDRLNAAAVEAEKCVTVIQQLGINKVRTRSDHNQEAAQYKLTMEE--LELFVQEIDNLCCII- 994
            |:::.:|..| :|....:|...:|   .|||..::    .|:..:|.  ::|..::.::.|.:: 
plant   243 LIMELINNVA-KAHGGFSVFAGVG---ERTREGND----LYREMIESGVIKLGEKQSESKCALVY 299

  Fly   995 -----DEGASVR---ELLVLGKQFVERSESQLQLSLESL-----EESELETLINE-GSSLRIE-- 1043
                 ..||..|   ..|.:.:.|.:.....:.|.::::     ..||:..|:.. .|::..:  
plant   300 GQMNEPPGARARVGLTGLTVAEYFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPT 364

  Fly  1044 -LQQLDLLQKRLKQCKWYKRSQGLRETSSKLTYQDVKNLLHIAAADLDPTDP-------YVDKE- 1099
             ...|..||:|:             .|:.|.:...|: .:::.|.||  |||       ::|.. 
plant   365 LASDLGALQERI-------------TTTKKGSITSVQ-AIYVPADDL--TDPAPATTFAHLDATT 413

  Fly  1100 --MRKLQQIG--ADIEAWESQAAKYFRRLTQQHELGEIEQFLKSASDINGQVPSHGLLKDALRKA 1160
              .|::.::|  ..::..:|.:     |:...|.||  |:...:|..:...:.::..|:|.:.  
plant   414 VLSRQISELGIYPAVDPLDSTS-----RMLSPHILG--EEHYNTARGVQKVLQNYKNLQDIIA-- 469

  Fly  1161 REWLRAVEQLQQNNHVTYCHTLEAMIERGLNIPIQL---------------EELSRMQGHLNSAH 1210
               :..:::|.:::.:|.....:  |:|.|:.|..:               |.::..||.|:..:
plant   470 ---ILGMDELSEDDKLTVARARK--IQRFLSQPFHVAEIFTGAPGKYVDLKENINSFQGLLDGKY 529

  Fly  1211 QWKDNTACAFLKKGTFYTL--LEVLMPRSDAINIDS 1244
               |:     |.:.:||.:  ::.::.:::.|..:|
plant   530 ---DD-----LSEQSFYMVGGIDEVVAKAEKIAKES 557

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kdm5NP_523486.1 JmjN 160..201 CDD:128818
ARID_JARID 226..312 CDD:350628
PHD1_Lid_like 450..495 CDD:277078
JmjC 624..740 CDD:396791
zf-C5HC2 830..882 CDD:460750
PLU-1 896..1231 CDD:462475 62/346 (18%)
PHD2_KDM5A 1295..1351 CDD:277079
PHD3_KDM5A_like 1755..1805 CDD:277083
AT5G08680NP_680155.1 Synthase_beta 1..50 CDD:463277
AtpD 85..557 CDD:439825 63/359 (18%)
Blue background indicates that the domain is not in the aligned region.

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