DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lid and ELF6

DIOPT Version :9

Sequence 1:NP_001245908.1 Gene:lid / 33837 FlyBaseID:FBgn0031759 Length:1838 Species:Drosophila melanogaster
Sequence 2:NP_196044.2 Gene:ELF6 / 830303 AraportID:AT5G04240 Length:1340 Species:Arabidopsis thaliana


Alignment Length:1778 Identity:352/1778 - (19%)
Similarity:578/1778 - (32%) Gaps:678/1778 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   159 PECPVFRPTTEEFKNPLAYISKIRSIAEKCGIAKILPPATWSPPFAVDVDKLRFVPRVQRLNELE 223
            |..||||||..||.:|:||||||...|...||.||:||                :|:       .
plant    14 PLAPVFRPTDTEFADPIAYISKIEKEASAFGICKIIPP----------------LPK-------P 55

  Fly   224 AKTRVKLNFLDQIAKFWELQGSSLKIPMVERKALDLYTLHRIVQEEGGMEQTTKDRKWAKVANRM 288
            :|..|..|....:.|..||. |.:.|..|.::...::|..   |:|.|  ||.|..|..|..:..
plant    56 SKKYVFYNLNKSLLKCPELV-SDVDISKVCKEDRAVFTTR---QQELG--QTVKKNKGEKGKSNS 114

  Fly   289 QYPSSKSVGATLKAHYERILHPFEVYTSGKVLGPTPTSSGSGSTPVKLEDGGGTDYKAHEIPTRQ 353
            |....|                 :|:.||.|.           |..:.|......||. ::.|.:
plant   115 QRSGVK-----------------QVWQSGGVY-----------TLDQFEAKSKAFYKT-QLGTVK 150

  Fly   354 QIAPPNETNTRRSKRFGNSNASCGLSGVTPTTKPSAGVFVKTETKEEFKRDLLSSFNAVNSGGSP 418
            ::||.               ....|.......||   :::      |:..|:         .||.
plant   151 ELAPV---------------VIEALFWKAALEKP---IYI------EYANDV---------PGSA 182

  Fly   419 LATGTTANTRGASQKKGGEPPALIVDPLMKYICHICNRGDVEESMLLCDGCDDSYHTFCLLPPLT 483
            .                |||                               :|.:..|       
plant   183 F----------------GEP-------------------------------EDHFRHF------- 193

  Fly   484 SIPKGEWLCPRCVVEEVSKPQEAFGFEQAEREYTLQQFGQMADQFKQEYFRKPVHLVPTEMVERE 548
                            ..:.:...||.|.:.|.. ...|:..::...|..:.|  |..|.:..::
plant   194 ----------------RQRKRRGRGFYQRKTENN-DPSGKNGEKSSPEVEKAP--LASTSLSSQD 239

  Fly   549 FWRIVSSIDEDVTVEYGADLHTMDHGSGFPTKSSLYLLPGDQEYAESSWNLNNLPLLEDSILGHI 613
                 ||..:::.:     :..|:..:|:             :.:.|||||..:.....|:...:
plant   240 -----SSKQKNMDI-----VDEMEGTAGW-------------KLSNSSWNLQMIARSPGSVTRFM 281

  Fly   614 NADISGMNAPWMYVGMCFAAFCWHNEDHWSYSINYLHWGEPKTWYGVPGSCAEQFEETMKQAAPE 678
            ..||.|:.:|.:|:||.|:.|.||.|||..:|:||||.|.|||||.||...|..|||.:::.:..
plant   282 PDDIPGVTSPMVYIGMLFSWFAWHVEDHELHSMNYLHTGSPKTWYAVPCDYALDFEEVIRKNSYG 346

  Fly   679 LFSSQPDLLHQL---VTIMNPNILMNNRVPVFRTDQHAGEFVITFPRAYHAGFNQGYNFAEAVNF 740
            ....|...|.||   .|:::|.:::.:.:|..|..|:.||||:||||:||.||:.|:|..||.||
plant   347 RNIDQLAALTQLGEKTTLVSPEMIVASGIPCCRLVQNPGEFVVTFPRSYHVGFSHGFNCGEAANF 411

  Fly   741 APADWLKMGRECVNHYSMLRRFCVFSHDELVCKMALE-----PAKLTFGIATACYIDMAEMVDTE 800
            ....||.:.:|.....:.:....:.||.:|:..:.:.     |..|..|..:      :.:.|.:
plant   412 GTPQWLNVAKEAAVRRAAMNYLPMLSHQQLLYLLTMSFVSRVPRSLLPGGRS------SRLRDRQ 470

  Fly   801 KKLRKSLLEWGVTRAERRAF--ELVNDDERHCQECNTTCFLSAVACECNDKLIVCLRHYTVLCGC 863
            ::.|:.|:        :|||  :::|:                     |..|.|.||        
plant   471 REEREFLV--------KRAFVEDILNE---------------------NKNLSVLLR-------- 498

  Fly   864 APEKHTLIYRYTLDEMP----LMLQKLKVKAHSFERWLSRCRDIVDAHTPTSVTLQELQELCKEA 924
              |..:.:..:..|.:|    |.|....|...|             |.:|.:|..:||:|...|.
plant   499 --EPGSRLVMWDPDLLPRHSALALAAAGVAGAS-------------AVSPPAVAKKELEEGHSEL 548

  Fly   925 ETKKFPSSLLIDRLNAAAVEAEKCVTVIQQLGINKVRTRSDHNQEAAQYKLTMEELELFVQEIDN 989
            :.|: .:|||                                           |||.||::::::
plant   549 QNKE-KTSLL-------------------------------------------EELSLFMEKLND 569

  Fly   990 LCCIIDEGASVRELL----------------VLGKQF---VERSESQLQLSLESLEESELETLIN 1035
            :....|:|     ||                |||..|   |:.||.    :|:.|.|.:.||   
plant   570 VYYDDDDG-----LLNDFQVDTGTLPCVACGVLGFPFMSVVQPSEK----ALKDLSERQGET--- 622

  Fly  1036 EGSSLRIELQQLDLLQKRLKQCKWYKRSQGLRETSSKLTYQDVKNLLHIAAADLDPTDPYVDKEM 1100
                   :.|::..|......|:|        :|||:.....:..|.|..            :..
plant   623 -------DAQEIMTLSSEKSDCEW--------KTSSRYIRPRIFCLEHTI------------ELQ 660

  Fly  1101 RKLQQIGA---------DIEAWESQAAKYFRRLTQQHELGEIEQFLKSASDINGQVPSHGLLKDA 1156
            |.||..|.         |.:.:::.||.....:.......::  .|:|||               
plant   661 RLLQSRGGLKFLVICHKDFQKFKAHAAIVAEEVKVPFSYDDV--LLESAS--------------- 708

  Fly  1157 LRKAREWLRAVEQLQQNNHVTYCHTLEAMIERGLNIPI-----------QLEELSRMQGHLNSAH 1210
                :|.|..:: |...:...|.|:::...|.|:|:..           :::....:.|..:...
plant   709 ----QEELSLID-LAIEDEEKYEHSVDWTSELGINLRYCVKVRKNSPTKKIQHALSLGGLFSDTS 768

  Fly  1211 QWKDNTACAFLKK----------GTFYTLLEVLMPRSDA---INIDSDLKPR----FQDDFLKEK 1258
            |..|.|...:|::          .:.:|..|.|..::|.   .|:||....:    .|....|:.
plant   769 QMLDFTTIRWLQRKSRSKAKPSSTSSFTPCEHLEVKADGKLRDNLDSQTGKKEEKIIQYSRKKKL 833

  Fly  1259 NP---AEIVASFKHAEEQELLDMRELR-------------------RQNMNK------------- 1288
            ||   ||.|        |||..:.:.:                   |..||.             
plant   834 NPKPSAEQV--------QELATLAKSKDFDKTCKNFSSRSHLDSAIRSEMNSEIGDSGRVIGVSF 890

  Fly  1289 --NPMRDMFCLCKSEFR----------NLMFNCQLCRDWFHEDCVPPPSATNQNGIVNGGSGP-- 1339
              ||       |.|.|.          .:.|...|           ..:.||...:|||.|..  
plant   891 SINP-------CSSSFTVGHGQEHPEITVKFGSDL-----------DGNVTNSLSMVNGDSADLT 937

  Fly  1340 -------------------GTNRPKWLCPSCVRSKRPRLETILPLLVQLQQLPIRLPEDEALRCL 1385
                               |:|....:..|         :|||.........|.:|..|..  | 
plant   938 LTSISREQHQGHSMTSNNNGSNSGSHVVAS---------QTILVSTGDNHDGPRKLSGDYV--C- 990

  Fly  1386 AERAMNWQDRARKALSSPDVSAAQEAIMAQQQQKRRSEGGAGVGNISSPRKPRRRGSLTKEASGS 1450
                           |...|...|||:....|:            ...||              |
plant   991 ---------------SDVSVRGIQEAVEMSDQE------------FGEPR--------------S 1014

  Fly  1451 TESDADDDDDEDECRLRIVE----DNFSNDEDEPRTAPATSTVNSDLLKLLSDSE---------- 1501
            |.::.     |||.:.:||:    :....|.::...|.|.||..:...:::..:|          
plant  1015 TVTNI-----EDEQQSQIVKPTQREAVFGDHEQVEGAEAVSTRENLCSEIILHTEHSSAHVGMEI 1074

  Fly  1502 ------IENL-LDLMMEGDLLEVSLDETQELWRILETMPPTLLQAEAMERVVQYMQRQRQQHTNP 1559
                  .||| :|:..:|:.||.|        .||.:                       .:.:.
plant  1075 PDINTASENLVVDMTHDGEPLESS--------DILSS-----------------------SNGDE 1108

  Fly  1560 LPTSGAEDSNDSLMVQNSPNSNSNSGGATGSASNS-GRNKKRR----SNDTGGNSAVPRKKQSTP 1619
            ..::|.:..||.|.:::..:|:.|:  ....|.|| |..||:|    .::|..|          |
plant  1109 ASSNGLQVLNDELSMESEVSSSENT--EVIEAPNSMGEAKKKRKIESESETNDN----------P 1161

  Fly  1620 KQTPGKKGSAAAARKSDAKASPAASTT-PGADADAENKQANGGNTNSSTGSGGGNSATTTPTPGS 1683
            :.:.|...|.....:|..|......|: ...:...|.|:........:..:..|:.....||  :
plant  1162 ESSIGFIRSPCEGLRSRGKRKATCETSLKHTETSDEEKKPIAKRLKKTPKACSGSRQQEVPT--T 1224

  Fly  1684 THKKR------KRTSTTATNNNNNNNNNSTNNSNSSTNLNSNTTSGQGAATGGNNATGGQKKHAQ 1742
            ||..|      |.|..:......:..|..|:               :|.         |:|..|.
plant  1225 THPNRCYLEGCKMTFESKAKLQTHKRNRCTH---------------EGC---------GKKFRAH 1265

  Fly  1743 R----SQQAAQEDDEEECRAENC 1761
            :    .|:..:::...||..:.|
plant  1266 KYLVLHQRVHKDERPFECSWKGC 1288

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lidNP_001245908.1 JmjN 160..201 CDD:128818 22/40 (55%)
ARID 227..312 CDD:198082 19/84 (23%)
PHD1_Lid_like 450..495 CDD:277078 2/44 (5%)
JmjC 624..740 CDD:202224 52/118 (44%)
zf-C5HC2 830..882 CDD:280996 8/55 (15%)
PLU-1 896..1229 CDD:285609 65/381 (17%)
PHD2_KDM5A 1295..1351 CDD:277079 13/86 (15%)
PHD3_KDM5A_like 1755..1805 CDD:277083 3/7 (43%)
ELF6NP_196044.2 JmjN 17..50 CDD:396793 20/32 (63%)
JmjC 292..411 CDD:396791 52/118 (44%)
C2H2 Zn finger 1230..1255 CDD:275368 3/24 (13%)
C2H2 Zn finger 1253..1275 CDD:275368 6/45 (13%)
C2H2 Zn finger 1283..1305 CDD:275368 2/6 (33%)
C2H2 Zn finger 1313..1333 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0055
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D664180at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10694
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.920

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