DRSC/TRiP Functional Genomics Resources

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Protein Alignment lid and AT2G38950

DIOPT Version :9

Sequence 1:NP_001245908.1 Gene:lid / 33837 FlyBaseID:FBgn0031759 Length:1838 Species:Drosophila melanogaster
Sequence 2:NP_181429.2 Gene:AT2G38950 / 818480 AraportID:AT2G38950 Length:708 Species:Arabidopsis thaliana


Alignment Length:752 Identity:199/752 - (26%)
Similarity:304/752 - (40%) Gaps:191/752 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   319 VLGPTPTSSGSGSTPVKLED--GGGTDYK---------------AHEIPTRQQIAPPNETNTRRS 366
            ||...|....|..:..:.|.  |.|||.|               .|.||:.:.:. |.:|..||.
plant    31 VLRNVPRDKESPRSVSRQEQTTGFGTDDKDSCNMFLKSRPWIVHGHTIPSSEALR-PKKTEVRRR 94

  Fly   367 KRFGNSNASCGLSGVTPTTK--PSAGVFVKTETKEEFKRDLLSSFNAVNSGGSPLATGTTANTRG 429
            :....|.           ||  ..|.||..||  ||| ||.||..:::.....|..         
plant    95 RPLKVSE-----------TKVLEEAPVFNPTE--EEF-RDTLSYISSLRDRAEPYG--------- 136

  Fly   430 ASQKKGGEPPALIVDPLMKYICHICNRGDVEESMLLCDGCDDSYHTFCLLPPLTSIPKGEWLCPR 494
                                   ||                      |::||      ..|. |.
plant   137 -----------------------IC----------------------CVVPP------PSWK-PP 149

  Fly   495 CVVEE-------VSKPQ-EAFGFEQAERE---------------------------YTLQQFGQM 524
            |:::|       ...|| :.||.:...|:                           |||:.|...
plant   150 CLLKEKQIWEASTFFPQVQLFGIQTENRKIKKEVDADSNDAASEGVQLCRVERGPGYTLKSFKNF 214

  Fly   525 ADQFKQEYF---------------RKPVHLVPTEMVEREFWRIVSSIDEDVTVEYGADLHTMDHG 574
            ||.:|:.:|               .||..|:..: :|:|:.:||.|...::.|.||.||.|...|
plant   215 ADTYKKSHFGMKDEVLGSENSSPSLKPNELIVAD-IEKEYRQIVESPLIEIGVLYGNDLDTATFG 278

  Fly   575 SGFPTKSSLYLLPGDQEYAESSWNLNNLPLLEDSILGHINADISGMNAPWMYVGMCFAAFCWHNE 639
            ||||..:     |.:.....|.||||:...|..|:|.  ..|...:..|.:.||||.::..|.:|
plant   279 SGFPLSA-----PSESSKYSSGWNLNSTAKLPGSLLS--LEDCESVCVPRLSVGMCLSSQFWKSE 336

  Fly   640 DHWSYSINYLHWGEPKTWYGVPGSCAEQFEETMKQAAPELFSSQPDLLHQLVTIMNPNILMNNRV 704
            ....||:.|||.|.|:.||.|.|....:|:..||....|:...||...|..|.:|:|..|....:
plant   337 KERLYSLCYLHVGAPRVWYSVAGCHRSKFKAAMKSFILEMSGEQPKKSHNPVMMMSPYQLSVEGI 401

  Fly   705 PVFRTDQHAGEFVITFPRAYHAGFNQGYNFAEAVNFAPADWLKMGRECVNHYSMLRRFCVFSHDE 769
            ||.|..||.|::||.||.:|::.|:.|:|..|..||||.|||..|...|.....:.:..:.|:|:
plant   402 PVTRCVQHPGQYVIIFPGSYYSAFDCGFNCLEKANFAPLDWLPHGDIAVQVNQEMSKTSLISYDK 466

  Fly   770 LVCKMALEPAKL--TFGIA---TACYID----------MAEMVDTEKKLRKSLLEWGVTRAER-- 817
            |:...|.|..|.  .:|::   ||||..          .:.::.:..||.|:..|:.::..|.  
plant   467 LLFSAAREAVKCLKEYGLSKKNTACYTRWNDSCGTDGLFSNIIKSRIKLEKNRREFLISSLESQR 531

  Fly   818 --RAFELVNDDERHCQECNTTCFLSAVACECNDKLIVCLRHYTVLCGCAPEKHTLIYRYTLDEMP 880
              ::::.||  :|.|..|....:||||.|.|:.....||.|...||.|..::.:.:||||:||:.
plant   532 MDKSYDAVN--KRECCVCLGDLYLSAVNCSCSANRYSCLNHMRKLCACPCDRKSFLYRYTMDELN 594

  Fly   881 LMLQKLK-VKAHSFERWLSRCRDIVD---AHTPTSVTLQELQELCKEAETKKFPSSLLIDRLNAA 941
            |:::.|: .|..|..||..     :|   ..:|.:.:.:..::..||.: :..|.:  |.|.:.|
plant   595 LLVEALEGKKLSSMFRWAG-----IDQKFCASPATTSSKPEEDKGKETD-EVTPCN--ITRKDVA 651

  Fly   942 AVEAEKCVTVIQQLGINKVRTRSDHNQEAAQYKLTME 978
            |  ..|..|.::...:..:....|.|.:|   |.|:|
plant   652 A--GTKDQTRVKARSLADILNVKDGNNDA---KETLE 683

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lidNP_001245908.1 JmjN 160..201 CDD:128818
ARID 227..312 CDD:198082
PHD1_Lid_like 450..495 CDD:277078 7/44 (16%)
JmjC 624..740 CDD:202224 43/115 (37%)
zf-C5HC2 830..882 CDD:280996 20/51 (39%)
PLU-1 896..1229 CDD:285609 18/86 (21%)
PHD2_KDM5A 1295..1351 CDD:277079
PHD3_KDM5A_like 1755..1805 CDD:277083
AT2G38950NP_181429.2 JmjN 107..148 CDD:128818 19/104 (18%)
JmjC 321..437 CDD:202224 43/115 (37%)
zf-C5HC2 544..596 CDD:280996 20/51 (39%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 90 1.000 Domainoid score I2656
eggNOG 1 0.900 - - E1_COG0055
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D664180at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10694
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.920

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