DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kdm5 and Kdm4d

DIOPT Version :10

Sequence 1:NP_523486.1 Gene:Kdm5 / 33837 FlyBaseID:FBgn0031759 Length:1838 Species:Drosophila melanogaster
Sequence 2:NP_001073180.1 Gene:Kdm4d / 689582 RGDID:1591045 Length:510 Species:Rattus norvegicus


Alignment Length:508 Identity:134/508 - (26%)
Similarity:199/508 - (39%) Gaps:133/508 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   382 TPTTKPSAGVFVKTETKEEFKRDLLSSFNAVNSGGSPLATGTTANTRGASQKKGGEPPALIVDPL 446
            |....|:..:.:...|||||     :.|:                                    
  Rat     6 TCAQNPNCSIMIFRPTKEEF-----NDFD------------------------------------ 29

  Fly   447 MKYICHICNRGDVEESMLLCDGCDDSYHTFCLLPPLTSIPKGEW------------LCPRCVVEE 499
             |||.::.::|.....:                  ...||..||            |....:.:.
  Rat    30 -KYIAYMESQGAHRAGL------------------AKVIPPKEWRARQSYDNISNILIATPLQQV 75

  Fly   500 VSKPQEAF-GFEQAEREYTLQQFGQMADQFKQEYFRKPVHLVPTEMVEREFW--RIVSSIDEDVT 561
            ||.....| .:.:.::..|:.|:..:|:..|   ::.|.|| ..|.:||::|  |:..|      
  Rat    76 VSGQAGVFTQYHKKKKAMTVGQYRHLANSKK---YQTPPHL-DFEDLERKYWKNRLYES------ 130

  Fly   562 VEYGADLHTMDHGSGFPTKSSLYLLPGDQEYAESSWNLNNLPLLEDSILGHINADISGMNAPWMY 626
            ..||||:    .||.|..|:             ..||:.:|..::|.:.......|.|:|.|::|
  Rat   131 PIYGADV----SGSLFDGKT-------------QQWNVGHLGTIQDLLEQECGIVIEGVNTPYLY 178

  Fly   627 VGMCFAAFCWHNEDHWSYSINYLHWGEPKTWYGVPGSCAEQFEETMKQAAPELFSSQPDLLHQLV 691
            .||...:|.||.||...|||||||:|:|||||.||.....:.|...|:..|.........|...|
  Rat   179 FGMWKTSFAWHTEDMDLYSINYLHFGQPKTWYAVPPEHGRRLELLAKELFPGSSQGCQAFLRHKV 243

  Fly   692 TIMNPNILMNNRVPVFRTDQHAGEFVITFPRAYHAGFNQGYNFAEAVNFAPADWLKMGR---ECV 753
            .:::|.:|..|.:|..|..|.||||::|||..||||||.|:|.|||:|||...|:..|:   :| 
  Rat   244 ALISPTVLKENGIPFGRITQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDYGKVASQC- 307

  Fly   754 NHYSMLRRFCVFSHDELVCKMALEPAKLTFGIATACYIDMAEMVDTEK--KLRKSLLEWGVTRAE 816
               |.......||.|..|  ..|:|.:........   |.|.:..||.  ...:.|..|.|.:|.
  Rat   308 ---SCGEARVSFSMDAFV--RILQPERYEMWKRGQ---DQAVVDHTEAMGPTSQELTTWRVIQAP 364

  Fly   817 RRAFELVNDDERHCQECNTTCFLSAVACECNDKLIVCLRHYTVLCGCAPEKHT 869
            |:.:.|.:...|....|     |..||.:.|      :.:.|.:|      ||
  Rat   365 RKTWGLKHLRLRQVSRC-----LLPVATDSN------IANNTQMC------HT 400

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kdm5NP_523486.1 JmjN 160..201 CDD:128818
ARID_JARID 226..312 CDD:350628
PHD1_Lid_like 450..495 CDD:277078 7/56 (13%)
JmjC 624..740 CDD:396791 52/115 (45%)
zf-C5HC2 830..882 CDD:460750 9/40 (23%)
PLU-1 896..1231 CDD:462475
PHD2_KDM5A 1295..1351 CDD:277079
PHD3_KDM5A_like 1755..1805 CDD:277083
Kdm4dNP_001073180.1 JmjN 15..55 CDD:128818 13/99 (13%)
JmjC 176..292 CDD:396791 52/115 (45%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 397..510 3/10 (30%)
Blue background indicates that the domain is not in the aligned region.

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