Sequence 1: | NP_001245908.1 | Gene: | lid / 33837 | FlyBaseID: | FBgn0031759 | Length: | 1838 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_017456196.1 | Gene: | Jarid2 / 681740 | RGDID: | 1591663 | Length: | 1281 | Species: | Rattus norvegicus |
Alignment Length: | 991 | Identity: | 245/991 - (24%) |
---|---|---|---|
Similarity: | 396/991 - (39%) | Gaps: | 248/991 - (25%) |
- Green bases have known domain annotations that are detailed below.
Fly 1 MSAKTEADNTTAAN---SGGGGVGSGTSSGGGASANGTATP--------ARRLRTRNSTGNGTNS 54
Fly 55 GSESVKKSNANDEPSTPVTPAGATGSHTHAPPGISPAV------------MERPMPSVPMNHASS 107
Fly 108 SVSASKKYHNSCPHPTPTPAPTGHKKSVHTQPHSSNK--FDQGKNE----EFHFDTPPECPVFRP 166
Fly 167 TTEEFKNPLAYISKIRSIAEKCGIAKILPPATWSPPFAVDVDKLRFVPRVQRLNELEAKTRVKLN 231
Fly 232 FLDQIAKFWELQGSSL-KIPMVERKALDLYTLHRIVQEEGGMEQTTKDRKWAKVANRMQYP-SSK 294
Fly 295 SVGATLKAHYERILHPF-------------EVYTSGKVL----GPTPTSSGSGSTPVKLEDGGGT 342
Fly 343 D---YKAHEIPTRQQIAPPNETNTRRSKRFGNSNASCGLSGVTPTTKPSAGVFVKTETKEEFKRD 404
Fly 405 LLSSFNAVNSGGSPLATGTTANTRGASQKKGGEPPALIVDPLMKYICHICNRGDVEESMLLCDGC 469
Fly 470 DDSYHTFCLLPPLTSIPKGEWLCPRCVVEEVSKPQEAFGFEQAEREYTLQQFGQMADQFKQEYFR 534
Fly 535 KPVHLVPTEMVEREFWRIVSSIDEDVTVEYGADLHTMDHGSGFPTKSSLYLLPGDQEYAESSWNL 599
Fly 600 NNLPLLEDSILGHINADISGMNAPWMYVGMCFAAFCW-HNEDHWSYSINYLHWGEPKTWYGVPGS 663
Fly 664 CAEQFEETMKQAAPELFSSQPDLLHQLV--------------TIMNPNILMNNRVPVFRTDQHAG 714
Fly 715 EFVITFPRAYHAGFNQGYNFAEAVNFAPADWLKMGRECVNHYSMLRRFCV--FSHDELVCKMALE 777
Fly 778 PAKLTFG--IATACYIDMAEMVDTEKKLRKSLLEWGVTRAER-----------------RAFELV 823
Fly 824 NDDERHCQECNTTCFLSAVACECNDKLIVC----LRHYTVLCGCAPEKHTLIYRYTLDEMPLMLQ 884
Fly 885 KLKVKAHSFERWLSRC 900 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
lid | NP_001245908.1 | JmjN | 160..201 | CDD:128818 | 18/40 (45%) |
ARID | 227..312 | CDD:198082 | 25/99 (25%) | ||
PHD1_Lid_like | 450..495 | CDD:277078 | 4/44 (9%) | ||
JmjC | 624..740 | CDD:202224 | 36/130 (28%) | ||
zf-C5HC2 | 830..882 | CDD:280996 | 19/55 (35%) | ||
PLU-1 | 896..1229 | CDD:285609 | 1/5 (20%) | ||
PHD2_KDM5A | 1295..1351 | CDD:277079 | |||
PHD3_KDM5A_like | 1755..1805 | CDD:277083 | |||
Jarid2 | XP_017456196.1 | None | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG0055 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D664180at2759 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | O | PTHR10694 |
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
5 | 4.920 |