DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lid and kdm4c

DIOPT Version :9

Sequence 1:NP_001245908.1 Gene:lid / 33837 FlyBaseID:FBgn0031759 Length:1838 Species:Drosophila melanogaster
Sequence 2:NP_001077320.1 Gene:kdm4c / 570194 ZFINID:ZDB-GENE-070209-38 Length:1482 Species:Danio rerio


Alignment Length:1375 Identity:288/1375 - (20%)
Similarity:465/1375 - (33%) Gaps:451/1375 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   380 GVTPTTKPSAGVFVKTETKEEFKRDLLSSFNA----VNSGGSPLATGTTANTRGASQ---KKGGE 437
            |.:....|:..:.....|.||||     .||.    :.|.|        |:..|.::   .||.:
Zfish     5 GASAPANPACKIMTFRPTMEEFK-----DFNQYLVYMESQG--------AHRAGLAKVIPPKGWK 56

  Fly   438 PPALIVDPLMKYICHICNRGDVEESMLLCDGCDDSYHTFCLLPPLTSIPKGE-WLCPRCVVEEVS 501
            |..              |..|:::              |.:..|:..:..|: .|..:..:::  
Zfish    57 PRR--------------NYDDIDD--------------FVIQAPIQQMVAGQSGLFTQYNIQK-- 91

  Fly   502 KPQEAFGFEQAEREYTLQQFGQMADQFKQEYFRKPVHLVPTEMVEREFWR---IVSSIDEDVTVE 563
            ||            .|:|:|.::|:   .:.:..|.:| ..|.:||::|:   .||.|       
Zfish    92 KP------------LTVQEFRRLAN---SDMYCTPRYL-NYEDLERKYWKNLTFVSPI------- 133

  Fly   564 YGADLHTMDHGSGFPTKSSLYLLPGDQEYAESSWNLNNLPLLEDSILGHINADISGMNAPWMYVG 628
            ||||:      ||     :||    |::..|  ||:.:|..:.|.|.......|.|:|.|::|.|
Zfish   134 YGADV------SG-----TLY----DEDIEE--WNIGHLNSVLDVIEEDCGVSIQGVNTPYLYFG 181

  Fly   629 MCFAAFCWHNEDHWSYSINYLHWGEPKTWYGVPGSCAEQFEETMKQAAPELFSSQPDLLHQLVTI 693
            |...:|.||.||...|||||||:||||:||.:|....::.|.......|..|.|....|...:|:
Zfish   182 MWKTSFSWHTEDMDLYSINYLHFGEPKSWYAIPPEHGKRLERLAIGFFPNSFKSCEAFLRHKMTL 246

  Fly   694 MNPNILMNNRVPVFRTDQHAGEFVITFPRAYHAGFNQGYNFAEAVNFAPADWLKMGRECVNHYSM 758
            ::|::|....:|..:..|.||||:||||..||||||.|:|.||:.|||...|:..|:        
Zfish   247 ISPSVLKKYSIPFDKITQEAGEFMITFPYGYHAGFNHGFNCAESTNFASIRWIDYGK-------- 303

  Fly   759 LRRFCVFSHDELVCKMALEPAKLTFGIATACYIDMAEMVDTEKKLRKSLLEWGVTRAERRAFELV 823
            |...|..|.|  :.|::::|.                                |.|.:...:||.
Zfish   304 LATQCTCSKD--MVKISMDPF--------------------------------VRRFQPDRYELW 334

  Fly   824 NDDERHCQECNTTCFLSAVACECNDKLIVCLRHYTVLCGCAPEKHTLIYRYTLDEMPLMLQKLKV 888
            ...:..|.                                  ..|||....|..|:         
Zfish   335 TQGKDSCS----------------------------------LDHTLPTPSTTPEL--------- 356

  Fly   889 KAHSFERWLSRCRDIVDAHTPTSVTLQELQELCKEAETKKFPSSLLIDRLNAAAVEAEKCVTVIQ 953
                 :.||.|.|                         :|.||:    .|:|....:::..||  
Zfish   357 -----QSWLQRRR-------------------------RKTPST----SLHAPRSCSKRLKTV-- 385

  Fly   954 QLGINKVRTRSDHNQEAAQYKLTMEELELFVQEIDNLCCIIDEGASVRELLVLGKQFVERSESQL 1018
                           ::|..|                    ..|...|...:..|...|..|..:
Zfish   386 ---------------DSAPVK--------------------GSGRRSRSAALTAKNKEEEEEDPV 415

  Fly  1019 QLSLESLEESELETLI-NEGSSLRIELQQLDLLQKRLKQCKWYKRSQGLRETSSKLTYQDVKNLL 1082
            :...||...|||:.|. .:...:::...:.|||.:..:|.|.....:.|..|.:..:.|:..::.
Zfish   416 KHQKESQYSSELKGLAGRQMCVVKVTRVESDLLAQSTRQVKEASPERLLTPTLTTTSSQNDPDVG 480

  Fly  1083 HIAAADLDPTDPYVDKEMRKLQQIGADIEAWESQAAKYFRRLTQQHELGEIEQFLKSASDI---- 1143
            |.::    .|...:|                |.|.:|      ..:...:.|....|.|||    
Zfish   481 HTSS----QTSLILD----------------EGQVSK------NTNSTAQSEPESTSESDIIVDV 519

  Fly  1144 ------NGQVPSHGLLKDALRKAREWLRAVEQLQQNNHVTYCHTLEAMIERGLNIPIQLEELSRM 1202
                  ..:.|:..|..:::         :|.:..:..||:..||.:     ....:...|....
Zfish   520 TLGSERTAKNPNQTLNCESV---------LETIAPSIPVTHSLTLHS-----TGATVLFSESDSQ 570

  Fly  1203 QGHLNSAHQ-----WKDNTAC---AFLKKGTFYTLLEVLMPRSDAIN-IDSDLK-------PRFQ 1251
            |..:.:...     .:|:..|   |..|:.:..:|...|.....::| .:|:::       |...
Zfish   571 QAKIETEETVIDTLTEDSIDCGTSALYKEQSSISLDPALQGSEPSMNRTNSEIQTTPFCEMPLLM 635

  Fly  1252 DDFLKEK-NPAEIVASFKHAEEQELLDMRELRRQNMNKNPMRD--MFCLCKS--------EFRNL 1305
            .:.::|: ||..:      |.|...|.: .:|..:.|..|...  :..|.||        |.|  
Zfish   636 PELIEERVNPQCL------APEMPSLTL-AIRPDSANHQPYNSAPILHLEKSHSPPVITDEVR-- 691

  Fly  1306 MFNC--QLCRDWFHEDCVPPPSATNQN--GIVNGGSGPGTN---RPKWLCPSCVRSKRPRLETIL 1363
              .|  :.|.||   ..:.|....:|:  .|.:......|:   .|:|..|.  .||:       
Zfish   692 --GCSERACPDW---PFILPKEGVSQSHKSISDSFKAKPTSASFAPQWGTPE--ESKQ------- 742

  Fly  1364 PLLVQLQQLPIRLPEDEALRCLAERAMNWQDRARKALSSPDVSAAQEAIMAQQQ--QKRRSEGGA 1426
                          |....:| .....|.|..:....::|..|..|.:......  ..:..|   
Zfish   743 --------------EGNIHKC-TSTDQNTQHESISNCTTPTRSILQSSATTHMDFIDSKMVE--- 789

  Fly  1427 GVGNISSPRKPRRRGSLTKEASGSTES-----------------------------DADDDDD-- 1460
            |||..:|.|...:..|||...|...||                             .||...|  
Zfish   790 GVGKETSQRIEEQSSSLTSSQSNFAESKPFTIWKNLSSDNPAVLIESLQPELVVGLTADYAHDSL 854

  Fly  1461 ------EDECRLRIVEDNFSNDEDEPRTAPATST-VNSDLLKL-LSDSEI-ENL-LDLMMEGDLL 1515
                  |..|:    ::.||   |.|.::|.|.| .|.:.:.: .||:|: ||. |||..|.:  
Zfish   855 PYTMWSESGCQ----QEKFS---DSPNSSPHTQTWTNLEPIPMQCSDTEVSENAPLDLKQENE-- 910

  Fly  1516 EVSLDETQELWRILETMPPTLLQAEAMERVVQYMQRQRQQHTNPLPTSGAEDSNDSLMVQNSPNS 1580
            ||...|..||.....:..|    .|...::.:|.:..:.:|...:..|.:.:|.|.         
Zfish   911 EVEPAEACELNEQAGSQEP----QEREFKIQEYYRSVKSEHDGSVSDSDSCESGDK--------- 962

  Fly  1581 NSNSGGATGSASNSGRNKKRRSN--DTG-GNSAVPRKKQSTPKQTPGKKGSAAAARKSDAKASPA 1642
                 ||..|:.:|..|......  :|| ....|......|.|:|  .|......||..|:|.|:
Zfish   963 -----GADSSSESSEENPMSDPEYVETGLEPGEVCTYHMQTVKKT--AKSWRHPLRKPTARAVPS 1020

  Fly  1643 ASTTPGADAD 1652
            |.....|..|
Zfish  1021 AVKQQAASDD 1030

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lidNP_001245908.1 JmjN 160..201 CDD:128818
ARID 227..312 CDD:198082
PHD1_Lid_like 450..495 CDD:277078 6/45 (13%)
JmjC 624..740 CDD:202224 50/115 (43%)
zf-C5HC2 830..882 CDD:280996 6/51 (12%)
PLU-1 896..1229 CDD:285609 56/351 (16%)
PHD2_KDM5A 1295..1351 CDD:277079 16/70 (23%)
PHD3_KDM5A_like 1755..1805 CDD:277083
kdm4cNP_001077320.1 JmjN 16..57 CDD:128818 13/53 (25%)
JmjC 177..293 CDD:202224 50/115 (43%)
PHD_SF 1079..1176 CDD:304600
ePHD_JMJD2C 1185..1294 CDD:277185
TUDOR 1308..1364 CDD:197660
TUDOR 1366..1421 CDD:197660
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170586200
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.