DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lid and kdm6a

DIOPT Version :9

Sequence 1:NP_001245908.1 Gene:lid / 33837 FlyBaseID:FBgn0031759 Length:1838 Species:Drosophila melanogaster
Sequence 2:XP_005167851.1 Gene:kdm6a / 569277 ZFINID:ZDB-GENE-081105-56 Length:1452 Species:Danio rerio


Alignment Length:1017 Identity:200/1017 - (19%)
Similarity:319/1017 - (31%) Gaps:343/1017 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 RNSTGNGTNSGSESVKKSNANDEPSTP-----VTPAGATGSHTHAPPGISPAVMERPMP------ 98
            |.|..||..:.|.....||:...|..|     .||:..|  ...|.|..:..|...|:|      
Zfish   578 RPSVSNGPVADSSLPTNSNSTPSPHHPHIALSRTPSALT--RCAAQPIANGPVPASPVPCSTAGT 640

  Fly    99 -------SVPMNHASSSVS-ASKKY--HNSCPHPTPTPAPTG---------HKKSVHTQPHSSNK 144
                   ||..||...|.| .:..|  .|:.||...||..:.         |..|......|...
Zfish   641 LGNTDAVSVGNNHLPGSGSNGNVPYLRQNALPHNCTTPTSSSMDDEQWKSQHINSTQGLQKSPGS 705

  Fly   145 FDQGKNEEFHFDTPPECPVFRPTTEEFKNPLAYISKIRSIAEKCGIAKILPPATWSPPFAVDVDK 209
            :..|.|.|..|.:                              .|.::..|.|....|       
Zfish   706 YSAGPNGEQPFSS------------------------------TGTSQPSPAAGTGGP------- 733

  Fly   210 LRFVPRVQRLNELEAKTRVKLNFLDQIAKFWELQGSSLKIPMVERKALDLYTLHRIVQEEGGMEQ 274
             ..|......::.:|:               |...:.|..|..:..|           ..||.:.
Zfish   734 -NQVGHSATASDTQAQ---------------EASHNHLPSPSSQSSA-----------TSGGQQG 771

  Fly   275 T--TKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPFEVYTSG-KVLGPTPTSSGSGSTPVKL 336
            |  ||:.|.:...:.:..|:|.:....|..|    :|..:..|:| |...|...||.:......|
Zfish   772 TVNTKESKPSGNGHSVGTPNSTATAEGLPNH----VHQGQADTAGAKPRSPGVLSSDNPQLSALL 832

  Fly   337 ---------EDGGGTDYKAHEIPTRQQIAPPNETNTRRSKRFGNSNAS--C-GLSGVTPTTKPSA 389
                     .:|||:.....::         |..:....|...||.||  | .:|..:|:.|.: 
Zfish   833 IGKANDSNNSNGGGSAAAGTKV---------NNVHPSLHKPQENSVASSPCSAMSAASPSPKTA- 887

  Fly   390 GVFVKTETKEEFKRDLLSSFNAVNSGGSPLATGTTANTRGASQKKGGEPPALIVDPLMKYICH-- 452
                          |..|:.|:|||..||     |.|.:|.   :..:.|..:..||   :||  
Zfish   888 --------------DHHSTQNSVNSLNSP-----TLNGKGL---EDSQSPLKVASPL---VCHKP 927

  Fly   453 ----------------------IC---NRGDVEESMLLCDGCDDSYHTFCLLPPLTSIPKGEWLC 492
                                  .|   .:..|..:.:|.|.|....   ...||:..:||     
Zfish   928 TPPSFTLWSSVSIYPSSSDVLKACRNLGKNGVSNNSILLDKCPPPR---LPPPPIPPLPK----- 984

  Fly   493 PRCVVEEVSKPQEAFGFEQAEREY--TLQQF----------------------GQMADQFKQEYF 533
                 ::::.|..:...|.....:  .|.||                      |..:.:...|  
Zfish   985 -----DKLNPPTPSIYLENKRDAFFPPLHQFCTNTANPVTVIRGLAGALKLDLGLFSTKTLVE-- 1042

  Fly   534 RKPVHLV--------PTE-----MVEREFWRIVSSIDEDVTVEYG--------ADLHTMDHGSGF 577
            ..|.|||        ||:     ...|:.||..||........|.        ..|...:...|.
Zfish  1043 ANPEHLVEVRTQLSQPTDENWDVTGSRKMWRCESSRSHTTIARYAQYQASSFQESLREENEKKGQ 1107

  Fly   578 PTKSSLYLLPGDQEYA-------------------ESSW-----NLNNLP-----LLEDSILGHI 613
            ...|.....|.:....                   |..|     .|:.||     :...::|.|:
Zfish  1108 KDHSDTESAPSENVVRRRRGPFKHIKFGTNIDLSDEKKWKLQLAELSKLPAFARVVSAGNLLSHV 1172

  Fly   614 NADISGMNAPWMYVGMCFAAFCWHNEDHWSYSINYLHWGEPKTWYGVPGSCAEQFEETMKQAAPE 678
            ...|.|||...:|:.:..:....|.|::...|:| ::.|        ||.| |.|      |.||
Zfish  1173 GHTILGMNTVQLYMKVPGSRTPGHQENNNFCSVN-INIG--------PGDC-EWF------AVPE 1221

  Fly   679 LF------SSQPDLLHQLVTIMNPNI--LMNNRVPVFRTDQHAGEFVITFPRAYHAGFNQG-YNF 734
            .:      ..:.:.::.|:....||:  |....|||:|..|..|:.|         ..|.| .::
Zfish  1222 PYWGVMNDFCEKNNINYLMGSWWPNLEDLYEANVPVYRFIQRPGDLV---------WLNTGTVHW 1277

  Fly   735 AEAVNFAPADWLKMGRECVNHYSM-LRRFCVFSHDELVCKMALEP-AKLTFGIATACYID---MA 794
            .:|:.:.......:|...|:.|.: :.|   :..::|....::.| ..|::.:|....:.   :.
Zfish  1278 VQAIGWCNNIAWNVGPLTVHQYKLAVER---YEWNKLQSVKSIVPMIHLSWNMARNIKVSDHKLF 1339

  Fly   795 EMVD-----TEKK---LRKSLLEWGVTRAERRAFELV-----NDDERH-CQECNTTCF-LSAVAC 844
            ||:.     |.|:   ||::|:..|.        |||     .|:..| |..|....| |..|..
Zfish  1340 EMIKYCLLRTLKQCQMLREALIAAGK--------ELVWHGRTKDEPAHYCSICEVEVFDLLFVTS 1396

  Fly   845 ECNDKLIVCLRHYTVLC-GCAP------EKHTLIYRYTLDEM 879
            |.|.:     :.|.|.| |||.      :...::.:|.:|::
Zfish  1397 ESNSR-----KTYVVHCQGCARRCSPNLDNFVVLEQYKIDDL 1433

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lidNP_001245908.1 JmjN 160..201 CDD:128818 3/40 (8%)
ARID 227..312 CDD:198082 15/86 (17%)
PHD1_Lid_like 450..495 CDD:277078 11/71 (15%)
JmjC 624..740 CDD:202224 28/124 (23%)
zf-C5HC2 830..882 CDD:280996 15/58 (26%)
PLU-1 896..1229 CDD:285609
PHD2_KDM5A 1295..1351 CDD:277079
PHD3_KDM5A_like 1755..1805 CDD:277083
kdm6aXP_005167851.1 TPR 74..332 CDD:223533
TPR repeat 95..123 CDD:276809
TPR repeat 131..176 CDD:276809
TPR repeat 181..211 CDD:276809
TPR repeat 222..250 CDD:276809
TPR repeat 260..295 CDD:276809
TPR_17 289..320 CDD:290167
TPR_11 302..365 CDD:290150
TPR repeat 302..329 CDD:276809
TPR repeat 334..364 CDD:276809
TPR_1 335..368 CDD:278916
TPR repeat 369..395 CDD:276809
SSDP 572..852 CDD:282372 67/343 (20%)
JmjC 1149..1213 CDD:214721 16/72 (22%)
JmjC 1183..1291 CDD:202224 28/132 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0055
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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