DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lid and kdm6al

DIOPT Version :9

Sequence 1:NP_001245908.1 Gene:lid / 33837 FlyBaseID:FBgn0031759 Length:1838 Species:Drosophila melanogaster
Sequence 2:XP_005168853.1 Gene:kdm6al / 569207 ZFINID:ZDB-GENE-070112-2002 Length:1356 Species:Danio rerio


Alignment Length:1012 Identity:193/1012 - (19%)
Similarity:306/1012 - (30%) Gaps:354/1012 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   776 LEPAKLTFGIATACYIDMAEMVDTEKKLRKSLLEWGVTRAERRAFELVNDDER-HCQECNTTCFL 839
            ::|.:::...|.|..:..|.  |.|||:           |..:|.|...:..| ..||.:|...:
Zfish     1 MKPCRVSVAAAAARRLSAAG--DEEKKM-----------AAGKASEPEEESPRLSAQESDTLARV 52

  Fly   840 SAVACECNDKLIVCLRHYTVLCGCAPEKHTLIYRYTLDEMPLMLQKLKVKAHSFERWLSRCRDIV 904
            .:                           :|.....|.|....::.|.|||       .||    
Zfish    53 DS---------------------------SLFGYQRLHEDGASMKALLVKA-------VRC---- 79

  Fly   905 DAHTPTSVTLQELQELCKEAETKKFPSSLL-IDRLNAAAVEAEKCVTVIQQLGINKVRTRSDHNQ 968
                        .:.|..:||.|..|.... :...|....|..|.::..|:.    ...:||:.:
Zfish    80 ------------YESLILKAEGKVDPEFFCQLGHFNLLLEEYPKALSAYQRY----YSLQSDYWK 128

  Fly   969 EAA----------QYKLTMEELELFVQEIDNLCCIIDEGAS-VREL-LVLGKQF-----VERSES 1016
            .||          .|......::.| ||:    ..||.|.| .:|: |.||..|     .|.|..
Zfish   129 NAAFLYGLGMVYFHYNAFQWAIKAF-QEV----LYIDPGFSRAKEIHLRLGLMFKVNTDYESSLK 188

  Fly  1017 QLQLSLESLEESELETLINEGSSLRIELQQLDLLQKRLKQCKWYKRSQGLRETSSKLTYQDVKNL 1081
            ..||:|.......|..     :.::..:..|..:|||.:..|        ....|.|..:|::..
Zfish   189 HFQLALIDSSRCTLSK-----AEIQFHIAHLYEIQKRHRAAK--------EAYESLLQTEDLQTP 240

  Fly  1082 LHIAAADLDPTDPYVDKEMRKLQQIGADIEAWESQAAKYFRRLTQQHELGE--------IEQFLK 1138
            :..||                |||:|     |.....:         :||:        |:...|
Zfish   241 VRAAA----------------LQQLG-----WMHHTVE---------QLGDKANKDSYAIQCLQK 275

  Fly  1139 S--ASDINGQ--------VPSHGLLKDALRKAREWLRAVEQLQQNNHVTYCHTLEAMIERGLNIP 1193
            |  |...:||        ..|.|.::||....|:.:...|....    |:|..       |:...
Zfish   276 SLEADPNSGQSWYFLGRCYSSIGKVQDAFISYRQSIDKSEASAD----TWCSI-------GVLYQ 329

  Fly  1194 IQLEELSRMQGHLNSAHQWKDNTACAFLKKGTFYTLLEVLMPRSDAINIDSDLKPRFQDDFLKEK 1258
            .|.:.:..:|.:: .|.|...:.|.|::..||.|   |......|||        :...:..:.|
Zfish   330 QQNQPMDALQAYI-CAVQLDHSHAAAWMDLGTLY---ESCNQPHDAI--------KCYINATRSK 382

  Fly  1259 ---NPAEIVASFKHAEEQELLDMRELRRQNMNKNPMRDMFCLCKSEFRNLMFNCQLCRDWFHEDC 1320
               |.|.:.|..|:.:.|                       .||....:|....:...:......
Zfish   383 TCSNTAALAARIKYLQAQ-----------------------FCKLRLNSLQGKSKTLPNIEEAWS 424

  Fly  1321 VP-PPSATNQNGIVNGG-----------SGPGTNRPKWLCPSCVRSKRPRLETILPLLVQLQQLP 1373
            :| |...|::.|:.:.|           ||...:.|  ..|....:..|......|...:....|
Zfish   425 LPIPAELTSRQGVQSTGPQACKAQPGASSGSQASAP--ALPPHSTALEPAGAQTSPARRRRSSSP 487

  Fly  1374 IRLPEDEALRCLAERAM-NW-----------QDRARKALSSP-------DVSAAQEAIMAQQQQK 1419
            .:...|......|...: :|           |.||.:|...|       .:.|...|:...|||.
Zfish   488 AQSSTDSWSSGSAHTPVPHWYLTPQKLQLLEQLRASRASLKPAQLQMLEQMEAQLSAMHLHQQQM 552

  Fly  1420 RRSEGGAGVGNISS-PRKPRRRGSLTKEASGSTESDADDDDDEDECRLRIVEDNFSNDEDEPRTA 1483
            |::..|....::|: |..|..||...:..                           ::...||..
Zfish   553 RQNSSGQIRPSLSNGPSLPASRGPALQTL---------------------------HNGPGPRPG 590

  Fly  1484 PATSTVNSDLLKLLSDSEIENLLDLMMEGDLLEVSLDETQELWRILETMPPTLLQAEAMERVVQY 1548
            |.|..|.:            |..:....||                                |.|
Zfish   591 PQTPAVRN------------NHTESRANGD--------------------------------VPY 611

  Fly  1549 MQRQRQQHTNPLP----TSGAEDSNDSLM----VQNSPNSN------SNSGGATGSASNSGRNK- 1598
            :      |.|.||    :.||...:..|.    :|..|.|:      ..|..::|||.....|: 
Zfish   612 L------HPNTLPHNCTSPGAGRRSPQLPPAQGLQKGPGSHWAGPNGIRSDSSSGSADGGPHNQV 670

  Fly  1599 --KRRSNDTGGNSAVPRKKQSTPKQTPGKKGSAAAARKSDAKASPAASTTPGADADAENKQANGG 1661
              ...:.|..|:|..|..::.:|...|....|.|           ..||.|..::.|  .|||  
Zfish   671 VDSASAGDAAGSSGSPPPRRCSPCALPHTATSGA-----------PHSTIPTKESAA--LQAN-- 720

  Fly  1662 NTNSSTGSGGGNSATTTPTPGSTHKKRKRTSTTATNN 1698
                      |::||.|.:|.|.|:.....|.|.|:|
Zfish   721 ----------GSTATDTHSPASPHRPPSPVSATTTDN 747

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lidNP_001245908.1 JmjN 160..201 CDD:128818
ARID 227..312 CDD:198082
PHD1_Lid_like 450..495 CDD:277078
JmjC 624..740 CDD:202224
zf-C5HC2 830..882 CDD:280996 6/51 (12%)
PLU-1 896..1229 CDD:285609 75/368 (20%)
PHD2_KDM5A 1295..1351 CDD:277079 12/67 (18%)
PHD3_KDM5A_like 1755..1805 CDD:277083
kdm6alXP_005168853.1 TPR_11 92..161 CDD:290150 14/77 (18%)
TPR repeat 93..121 CDD:276809 5/31 (16%)
TPR_11 129..194 CDD:290150 19/69 (28%)
TPR repeat 129..159 CDD:276809 6/34 (18%)
TPR_1 130..163 CDD:278916 8/37 (22%)
TPR repeat 164..194 CDD:276809 10/29 (34%)
TPR repeat 205..233 CDD:276809 6/35 (17%)
TPR repeat 243..278 CDD:276809 12/64 (19%)
TPR_17 272..303 CDD:290167 7/30 (23%)
TPR_11 285..348 CDD:290150 14/74 (19%)
TPR repeat 285..312 CDD:276809 6/26 (23%)
TPR repeat 317..347 CDD:276809 6/41 (15%)
TPR_1 318..351 CDD:278916 7/44 (16%)
TPR repeat 352..378 CDD:276809 9/36 (25%)
JmjC 1053..1117 CDD:214721
JmjC 1087..1195 CDD:202224
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0055
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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