DRSC/TRiP Functional Genomics Resources

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Protein Alignment lid and atp5f1b

DIOPT Version :9

Sequence 1:NP_001245908.1 Gene:lid / 33837 FlyBaseID:FBgn0031759 Length:1838 Species:Drosophila melanogaster
Sequence 2:NP_001019600.2 Gene:atp5f1b / 554135 ZFINID:ZDB-GENE-030131-124 Length:517 Species:Danio rerio


Alignment Length:394 Identity:73/394 - (18%)
Similarity:122/394 - (30%) Gaps:141/394 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   934 LIDRLNAAAVEAEKCVTVIQQLGINKVRTRSDHNQEAAQYKLTMEELELFVQEIDNLCCIIDEGA 998
            :::.|..|..::...:.|.|.||.|.|||            :.|:..|..|:...    ::|.||
Zfish    71 ILNALEVAGRDSRLVLEVAQHLGENTVRT------------IAMDGTEGLVRGQK----VLDTGA 119

  Fly   999 SVR-----ELL-----VLGKQFVERSE-SQLQLSLESLEESELETLINEGSSLRIELQQLDLLQK 1052
            .:|     |.|     |:|:...||.. |..|.:....|..|...:..|...|...::.:|||..
Zfish   120 PIRIPVGPETLGRIMNVIGEPIDERGPISTKQTAPIHAEAPEFTDMSVEQEILVTGIKVVDLLAP 184

  Fly  1053 RLKQCK---------------------------WYKRSQGLRETSSKLTYQDVKNLLH------- 1083
            ..|..|                           .|....|:.|.:     ::..:|.|       
Zfish   185 YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT-----REGNDLYHEMIESGV 244

  Fly  1084 IAAADLDPTDPYVDKEMRKLQQIGADIEAWESQAAKYFRRLTQQHEL---GEIEQFLKSASDIN- 1144
            |...|.......|..:|.:.....|.:.......|:|||....|..|   ..|.:|.::.|::: 
Zfish   245 INLKDTTSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSA 309

  Fly  1145 --GQVPSHGLLKDALRKAREWLRAVEQLQQNNHVTYCHTLEAMIERGLNIPIQLEELSRMQGHLN 1207
              |::||                         .|.|..||..             ::..||..:.
Zfish   310 LLGRIPS-------------------------AVGYQPTLAT-------------DMGTMQERIT 336

  Fly  1208 SAHQWKDNTACAFLKKGTFYTLLEVLMPRSDAINIDSDLKPRFQDDFLKEKNPAEIVASFKHAEE 1272
            :.            |||:..::..:.:|..|                |.:..||   .:|.|.:.
Zfish   337 TT------------KKGSITSVQAIYVPADD----------------LTDPAPA---TTFAHLDA 370

  Fly  1273 QELL 1276
            ..:|
Zfish   371 TTVL 374

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lidNP_001245908.1 JmjN 160..201 CDD:128818
ARID 227..312 CDD:198082
PHD1_Lid_like 450..495 CDD:277078
JmjC 624..740 CDD:202224
zf-C5HC2 830..882 CDD:280996
PLU-1 896..1229 CDD:285609 65/345 (19%)
PHD2_KDM5A 1295..1351 CDD:277079
PHD3_KDM5A_like 1755..1805 CDD:277083
atp5f1bNP_001019600.2 PRK09280 49..513 CDD:236447 73/394 (19%)
ATP-synt_ab_N 52..118 CDD:280947 14/62 (23%)
F1-ATPase_beta 120..399 CDD:238553 57/329 (17%)
ATP-synt_ab_C 407..515 CDD:278722
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0055
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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