DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kdm5 and atp5f1b

DIOPT Version :10

Sequence 1:NP_523486.1 Gene:Kdm5 / 33837 FlyBaseID:FBgn0031759 Length:1838 Species:Drosophila melanogaster
Sequence 2:NP_001019600.2 Gene:atp5f1b / 554135 ZFINID:ZDB-GENE-030131-124 Length:517 Species:Danio rerio


Alignment Length:394 Identity:73/394 - (18%)
Similarity:122/394 - (30%) Gaps:141/394 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   934 LIDRLNAAAVEAEKCVTVIQQLGINKVRTRSDHNQEAAQYKLTMEELELFVQEIDNLCCIIDEGA 998
            :::.|..|..::...:.|.|.||.|.|||            :.|:..|..|:...    ::|.||
Zfish    71 ILNALEVAGRDSRLVLEVAQHLGENTVRT------------IAMDGTEGLVRGQK----VLDTGA 119

  Fly   999 SVR-----ELL-----VLGKQFVERSE-SQLQLSLESLEESELETLINEGSSLRIELQQLDLLQK 1052
            .:|     |.|     |:|:...||.. |..|.:....|..|...:..|...|...::.:|||..
Zfish   120 PIRIPVGPETLGRIMNVIGEPIDERGPISTKQTAPIHAEAPEFTDMSVEQEILVTGIKVVDLLAP 184

  Fly  1053 RLKQCK---------------------------WYKRSQGLRETSSKLTYQDVKNLLH------- 1083
            ..|..|                           .|....|:.|.:     ::..:|.|       
Zfish   185 YAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERT-----REGNDLYHEMIESGV 244

  Fly  1084 IAAADLDPTDPYVDKEMRKLQQIGADIEAWESQAAKYFRRLTQQHEL---GEIEQFLKSASDIN- 1144
            |...|.......|..:|.:.....|.:.......|:|||....|..|   ..|.:|.::.|::: 
Zfish   245 INLKDTTSKVALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSA 309

  Fly  1145 --GQVPSHGLLKDALRKAREWLRAVEQLQQNNHVTYCHTLEAMIERGLNIPIQLEELSRMQGHLN 1207
              |::||                         .|.|..||..             ::..||..:.
Zfish   310 LLGRIPS-------------------------AVGYQPTLAT-------------DMGTMQERIT 336

  Fly  1208 SAHQWKDNTACAFLKKGTFYTLLEVLMPRSDAINIDSDLKPRFQDDFLKEKNPAEIVASFKHAEE 1272
            :.            |||:..::..:.:|..|                |.:..||   .:|.|.:.
Zfish   337 TT------------KKGSITSVQAIYVPADD----------------LTDPAPA---TTFAHLDA 370

  Fly  1273 QELL 1276
            ..:|
Zfish   371 TTVL 374

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kdm5NP_523486.1 JmjN 160..201 CDD:128818
ARID_JARID 226..312 CDD:350628
PHD1_Lid_like 450..495 CDD:277078
JmjC 624..740 CDD:396791
zf-C5HC2 830..882 CDD:460750
PLU-1 896..1231 CDD:462475 65/347 (19%)
PHD2_KDM5A 1295..1351 CDD:277079
PHD3_KDM5A_like 1755..1805 CDD:277083
atp5f1bNP_001019600.2 AtpD 50..515 CDD:439825 73/394 (19%)
Blue background indicates that the domain is not in the aligned region.

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