Sequence 1: | NP_001245908.1 | Gene: | lid / 33837 | FlyBaseID: | FBgn0031759 | Length: | 1838 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_038942397.1 | Gene: | Kdm6b / 363630 | RGDID: | 1307629 | Length: | 1636 | Species: | Rattus norvegicus |
Alignment Length: | 1045 | Identity: | 181/1045 - (17%) |
---|---|---|---|
Similarity: | 300/1045 - (28%) | Gaps: | 416/1045 - (39%) |
- Green bases have known domain annotations that are detailed below.
Fly 36 ATPARRLRTRNSTGNGTN---SGSESVKKSNANDEPSTPVTPAGATGSHTHAPPGISPAVMERPM 97
Fly 98 PSVPMNHASSSVSAS------KKYHNSCPHPTP-TPAPTGHKKSVHTQPHSSNKFDQGKNEEFHF 155
Fly 156 DTPPECPVFRPTTEEFKNPLAYISK-IRSIAEKCGIAKILP--PATWSPPFAVDVDKLRFVPRVQ 217
Fly 218 RLNELEAKTRVKLNFLDQIAKFWELQGSSLKIPMVERKALDLYTLHRIVQEEGGM---------- 272
Fly 273 ----------EQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPFEVYT------------ 315
Fly 316 ---SGKVLGPT-------PTSSGSGSTPVKLEDGGGTDYKAHEIP--TRQQI--------APPNE 360
Fly 361 TNTR-------------------RSKRFGNSNASCGLSGVTPTTKPSAGVFVKTETKEEFKRDLL 406
Fly 407 SSFNAVNSGGSPLATGTTANTRGASQKKGGEPPALIVDPLMKYICHICNRGDVEESMLLCDGCDD 471
Fly 472 SYHTFCLLP--PLTSI---------------------PKGEWLCPRCVVEEVSKP---------- 503
Fly 504 QEAFGFEQAEREYTLQQFGQMADQFKQEYFRKPVHLVPTEMVEREFWRIVSSIDE-----DVT-- 561
Fly 562 ---------------VEYGADLHTMDHGSGFPTKSSLYLLPGDQEYAESSWNLNNLPLLEDSILG 611
Fly 612 HINADISGMNAPWMYVGMCFAAFCWHNEDHWSYSINYLHWGEPKTWYGVPGSCA-----EQFEET 671
Fly 672 M-----KQAAPELFSSQPDLLHQLVTIMNPNILMNNRVPVFRTDQHAGEFVITFPRAYH------ 725
Fly 726 ----AGFNQG--------------------------------YNFAEAVNFAPADWLKMGRECVN 754
Fly 755 HYSMLRRFCVFSHDELVCKMALEPAKLTFGIATACYIDMAEMVDTEKKLRKSLLEWGVTRAERRA 819
Fly 820 FE-LVNDDER-HCQECNTTCF-LSAVACECNDKLIVCLRHYTVLC-GCAPEKH------TLIYRY 874
Fly 875 TLDEM 879 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
lid | NP_001245908.1 | JmjN | 160..201 | CDD:128818 | 10/43 (23%) |
ARID | 227..312 | CDD:198082 | 14/104 (13%) | ||
PHD1_Lid_like | 450..495 | CDD:277078 | 11/67 (16%) | ||
JmjC | 624..740 | CDD:202224 | 28/167 (17%) | ||
zf-C5HC2 | 830..882 | CDD:280996 | 14/58 (24%) | ||
PLU-1 | 896..1229 | CDD:285609 | |||
PHD2_KDM5A | 1295..1351 | CDD:277079 | |||
PHD3_KDM5A_like | 1755..1805 | CDD:277083 | |||
Kdm6b | XP_038942397.1 | TPR repeat | 106..136 | CDD:276809 | |
JmjC | 1336..1400 | CDD:214721 | 16/83 (19%) | ||
JmjC | 1370..1478 | CDD:396791 | 23/125 (18%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG0055 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
1 | 0.900 |