DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lid and jmjd-3.2

DIOPT Version :9

Sequence 1:NP_001245908.1 Gene:lid / 33837 FlyBaseID:FBgn0031759 Length:1838 Species:Drosophila melanogaster
Sequence 2:NP_510405.1 Gene:jmjd-3.2 / 181543 WormBaseID:WBGene00009089 Length:867 Species:Caenorhabditis elegans


Alignment Length:958 Identity:186/958 - (19%)
Similarity:299/958 - (31%) Gaps:312/958 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   101 PMNHASSSV--SASKKYHNSCPHPTPTPAPTGHKKSVHTQPHSSNKFDQGKNEEFHFDTPPECPV 163
            |.|..:|.:  |.|.|...|...|:.|...:|:.:........:.:|....|:.           
 Worm    57 PFNGNNSKLLESESHKLGESSTEPSGTTISSGNYEIAEDCSDETEQFIDPDNQV----------- 110

  Fly   164 FRPTTEEFKNPLAYISKIRSIAEKCGI--------------AKILPPATWSPPFAVDVDKLRFVP 214
              |......|....|.:...|.|:.|.              .:|||..:                
 Worm   111 --PAANFITNDCTTIEQTAKIQEESGTDSLIVSTNDSGSTNEQILPTQS---------------- 157

  Fly   215 RVQRLNELEAKTRVKLNFLDQIAK----FWELQGSSLKI--------------PMVERKALDLYT 261
                 |:.:.:.|::::..||:.:    :..:.|::.|:              |..:||...|  
 Worm   158 -----NDADFRERIEIDGRDQVDQHGNSYPPISGNNSKLRKSESHEQGEFLVGPSRKRKPETL-- 215

  Fly   262 LHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPFEVY------------ 314
                      :|..:|.||.|:     ..||:|             |:.|:::            
 Worm   216 ----------IETKSKKRKSAR-----GRPSNK-------------LNQFQIHQVSSDWNANAFL 252

  Fly   315 ------TSGKVLGPTPTSSGSGSTPVKL----EDGGGTDYKAHEIPTRQQIAPPNETNTRRS--- 366
                  .:|.:|   .:.....:...:|    |....||...|.:...:.:.  ..||..||   
 Worm   253 QFARRDAAGTIL---ESEEAKKTIDAQLEHFSEPSCSTDVSVHVVRDNENLG--LVTNKLRSLAI 312

  Fly   367 -----------------KRFGNSNASCGLSGVT-PTTKPSAGVFVKTETKEEFKRDLLSSFNAV- 412
                             |.|        |:|.| .....|.|..|.|:..:..|    |..|.| 
 Worm   313 PPISNLPSDLPSLYKLPKLF--------LTGATFMDVSKSKGKQVITKASKWIK----SGKNLVY 365

  Fly   413 -NSGGSPLATGTTA-NTRGASQKKGGEP---------PALIV------DPLMKYICHICN----- 455
             .||.|.|...||. ||.|..::...|.         |..|.      |....:|.:|.|     
 Worm   366 ETSGCSELFDETTKFNTDGKIEENTSEEYTNKDQYRLPVPIYNIENNSDETSNFIKNIVNTTTMC 430

  Fly   456 --RGDVEESMLLCDGCDDSYHTFCLLPPL---------TSIPKGE----WLCPRCVVEEVSKPQE 505
              || :||:.    |.|........|.||         ..:|:..    ::..:..|:.:.....
 Worm   431 IFRG-IEEAF----GMDRQTFDISTLAPLYPDYPLKIRRQMPQSSATNFYMNDKNTVQRLGNAWA 490

  Fly   506 AFGFEQ-------AEREYTLQQFGQMA---------------DQFKQEYFRKPVHLVPTEMVERE 548
            .|.||.       |:...:|:..|:.|               |..|::.....:.|.|...:   
 Worm   491 VFDFEGVTQLRDFAKNYESLKDIGRSAYQAILRNPSAFSEVMDDMKKQIKENTIPLSPEHKL--- 552

  Fly   549 FWRIVSSIDEDVTVEYGADLHTMDHGSGFPTKSSLYLLPGDQEYAESSWNLNNLP--LLED---S 608
                  ::.|:.||            ..|.|...|    .||.:.|....:..||  |..|   :
 Worm   553 ------TVHENATV------------LAFGTNIDL----DDQRFKEQLDEIKKLPDCLRPDGAGN 595

  Fly   609 ILGHINADISGMNAPWMYVGMCFAAFCWHNEDHWSYSINYLHWGEPKTWYGVPGSCAEQFEETMK 673
            :|......::|:|.|.:|.....|....|.|:....|||..|......|||||...:.:.|..:|
 Worm   596 LLNFAQESLAGLNKPQVYCKPPGARTTAHLENQALGSININHGPGDCVWYGVPMEYSGRMEVLIK 660

  Fly   674 QAAPELFSS--QPDLLHQLVTIMNPNILMNNRVPVFRTDQHAGEFVITFPRAYHAGFNQGYNFAE 736
            :....::.|  .|          :...|.|.::|..:..|..|:.|......:|  :.|..:||.
 Worm   661 KHRLNVYKSGYWP----------SEQELRNEKIPSQKFLQKPGDMVYVGIGTFH--WVQSNDFAI 713

  Fly   737 AV--NFAPADWLKMGRECV--NHYSMLRRFCVFSHDELVCKMALEPAKLTFGIATACYIDMAEMV 797
            .|  |.|...:.::....|  :|....:...:...:.:|.|||.:..:     |....|.:|...
 Worm   714 NVSWNVAQPTFNQLAAAMVIHDHNISSKATTLMPIEPIVWKMAEDGVE-----AEDENIFLARKA 773

  Fly   798 DTEKKLRKSLLEWGVTRAERRAFELVNDDERHCQECNTTCFLSAVACECNDKLIVCLRHYTVLCG 862
            ...|.|.||..|:.....|........                      |:|.|:.:..    |.
 Worm   774 IMLKSLAKSQFEFDFAIQENMLIRSAK----------------------NEKSIIPVER----CS 812

  Fly   863 CAPEKHTLIYRYTLD--EMPLMLQ---KLKVKAHSFERWLSRCRDIVD 905
            ....:..|....|||  :.|..|.   |.||||.:|:|     |||.|
 Worm   813 IQKCREVLFNMITLDNKQNPFCLNCIVKGKVKATAFQR-----RDIAD 855

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lidNP_001245908.1 JmjN 160..201 CDD:128818 9/54 (17%)
ARID 227..312 CDD:198082 18/102 (18%)
PHD1_Lid_like 450..495 CDD:277078 13/64 (20%)
JmjC 624..740 CDD:202224 28/119 (24%)
zf-C5HC2 830..882 CDD:280996 9/53 (17%)
PLU-1 896..1229 CDD:285609 4/10 (40%)
PHD2_KDM5A 1295..1351 CDD:277079
PHD3_KDM5A_like 1755..1805 CDD:277083
jmjd-3.2NP_510405.1 COG5644 40..>191 CDD:227931 26/167 (16%)
JmjC 577..641 CDD:214721 16/63 (25%)
JmjC 611..719 CDD:334913 28/119 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0055
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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