DRSC/TRiP Functional Genomics Resources

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Protein Alignment Kdm5 and Kdm5dl1

DIOPT Version :10

Sequence 1:NP_523486.1 Gene:Kdm5 / 33837 FlyBaseID:FBgn0031759 Length:1838 Species:Drosophila melanogaster
Sequence 2:XP_063136730.1 Gene:Kdm5dl1 / 103694543 RGDID:9260702 Length:159 Species:Rattus norvegicus


Alignment Length:143 Identity:88/143 - (61%)
Similarity:116/143 - (81%) Gaps:0/143 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   449 YICHICNRGDVEESMLLCDGCDDSYHTFCLLPPLTSIPKGEWLCPRCVVEEVSKPQEAFGFEQAE 513
            |:|.||:|||.::..|||.||:|:||.|||||||:.:|||.|.||:|::.|..:|.||||||||.
  Rat     4 YVCRICSRGDEDDRFLLCVGCNDNYHIFCLLPPLSEVPKGVWRCPKCILAECKRPLEAFGFEQAT 68

  Fly   514 REYTLQQFGQMADQFKQEYFRKPVHLVPTEMVEREFWRIVSSIDEDVTVEYGADLHTMDHGSGFP 578
            :|||||.||:|||.||.:||..|||:||||:||:||||:||||:||||||||||:|:.:.|||||
  Rat    69 QEYTLQSFGEMADSFKADYFNMPVHMVPTEVVEKEFWRLVSSIEEDVTVEYGADIHSKEFGSGFP 133

  Fly   579 TKSSLYLLPGDQE 591
            ..:|.:.|..:::
  Rat   134 VNNSKWTLSPEEK 146

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Kdm5NP_523486.1 JmjN 160..201 CDD:128818
ARID_JARID 226..312 CDD:350628
PHD1_Lid_like 450..495 CDD:277078 27/44 (61%)
JmjC 624..740 CDD:396791
zf-C5HC2 830..882 CDD:460750
PLU-1 896..1231 CDD:462475
PHD2_KDM5A 1295..1351 CDD:277079
PHD3_KDM5A_like 1755..1805 CDD:277083
Kdm5dl1XP_063136730.1 None
Blue background indicates that the domain is not in the aligned region.

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