DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment lid and kdm5a

DIOPT Version :9

Sequence 1:NP_001245908.1 Gene:lid / 33837 FlyBaseID:FBgn0031759 Length:1838 Species:Drosophila melanogaster
Sequence 2:XP_031754497.1 Gene:kdm5a / 100492348 XenbaseID:XB-GENE-996070 Length:1686 Species:Xenopus tropicalis


Alignment Length:1805 Identity:709/1805 - (39%)
Similarity:986/1805 - (54%) Gaps:295/1805 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   155 FDTPPECPVFRPTTEEFKNPLAYISKIRSIAEKCGIAKILPPATWSPPFAVDVDKLRFVPRVQRL 219
            |..|||||||.|:.|||.:||::|.:||.||||.||.||.||..|.||||.||....|.||||||
 Frog     7 FVPPPECPVFEPSWEEFSDPLSFIGRIRPIAEKTGICKIRPPKDWQPPFACDVKSFCFTPRVQRL 71

  Fly   220 NELEAKTRVKLNFLDQIAKFWELQGSSLKIPMVERKALDLYTLHRIVQEEGGMEQTTKDRKWAKV 284
            |||||.|||||:||||:.||||||||:|:||:|:||.||:|.|.::|..|||.|..||::||::|
 Frog    72 NELEAMTRVKLDFLDQLGKFWELQGSALRIPVVDRKLLDVYALSKVVSSEGGFEVVTKEKKWSQV 136

  Fly   285 ANRMQYPSSKSVGATLKAHYERILHPFEVYTSG-KVLGPTPTSSGSG-----STPVKLEDGGGTD 343
            .|||.|...|..|:.||.||:|||:|:|::.|| .::|...||....     :.|.:::......
 Frog   137 GNRMGYQPGKGTGSLLKLHYDRILYPYELFQSGVSLMGIKKTSLKEEEKLEVTEPCEVQKDLPET 201

  Fly   344 YKAHEIPTRQQIAPPNE------TNTRRSKRFGNSNASCGLSGVTPTTKPSAGVFVKTETKEEFK 402
            .|...:|.::.....:|      |.:...|:.....|:..:.||        |..||....|.:|
 Frog   202 EKKMIVPLKRSRRIKSEPETLEITKSPEMKKLHVFGAAARMIGV--------GDGVKDRADEAYK 258

  Fly   403 RDLLSSFNAVNSGGSPLATGTTANTRGASQKKGGEPPALIVDPLMKYICHICNRGDVEESMLLCD 467
            :...|...|.                 ..|::.|: .||.|..:..|||..|.|||.|:.:||||
 Frog   259 KRKTSKLEAF-----------------GMQRRHGK-GALSVSFVDLYICLFCARGDCEDKLLLCD 305

  Fly   468 GCDDSYHTFCLLPPLTSIPKGEWLCPRCVVEEVSKPQEAFGFEQAEREYTLQQFGQMADQFKQEY 532
            |||||||||||:|||:.:|||:|.||:||.||.|||:||||||||.||||||.||:|||.||.:|
 Frog   306 GCDDSYHTFCLIPPLSEVPKGDWRCPKCVAEECSKPREAFGFEQAVREYTLQSFGEMADSFKSDY 370

  Fly   533 FRKPVHLVPTEMVEREFWRIVSSIDEDVTVEYGADLHTMDHGSGFPTKSSLYLLPGDQE-YAESS 596
            |..|||:||||:||:||||:||||:|||.||||||:.:.|.|||||.......|..|:| ||...
 Frog   371 FNMPVHMVPTELVEKEFWRLVSSIEEDVIVEYGADISSRDFGSGFPVMDGRRKLTADEEDYAHCG 435

  Fly   597 WNLNNLPLLEDSILGHINADISGMNAPWMYVGMCFAAFCWHNEDHWSYSINYLHWGEPKTWYGVP 661
            |||||:|:||.|:|.|||||||||..||:||||||::||||.|||||||||||||||||||||||
 Frog   436 WNLNNMPVLEQSVLAHINADISGMKVPWLYVGMCFSSFCWHIEDHWSYSINYLHWGEPKTWYGVP 500

  Fly   662 GSCAEQFEETMKQAAPELFSSQPDLLHQLVTIMNPNILMNNRVPVFRTDQHAGEFVITFPRAYHA 726
            ...|||.|:.|:..|||||.:|||||||||||||||:||.:.|||:||:|.|||||||||||||:
 Frog   501 SHAAEQLEDVMRTLAPELFETQPDLLHQLVTIMNPNVLMEHGVPVYRTNQCAGEFVITFPRAYHS 565

  Fly   727 GFNQGYNFAEAVNFAPADWLKMGRECVNHYSMLRRFCVFSHDELVCKMALEPAKLTFGIATACYI 791
            ||||||||||||||..||||.|||:||:||..|||.|||||:||:.|||.:|..|..|:|.|...
 Frog   566 GFNQGYNFAEAVNFCTADWLSMGRQCVSHYRRLRRHCVFSHEELIFKMASDPECLDVGLAAAVCK 630

  Fly   792 DMAEMVDTEKKLRKSLLEWGVTRAERRAFELVNDDERHCQECNTTCFLSAVACECNDKLIVCLRH 856
            :|..|::.|.|||:.:::.||.:||..|||||.||||.|..|.|||||||:.|.|:...:|||.|
 Frog   631 EMTIMIEEETKLRELIVQLGVVQAEEEAFELVPDDERQCSSCRTTCFLSALTCSCSLDQLVCLNH 695

  Fly   857 YTVLCGCAPEKHTLIYRYTLDEMPLMLQKLKVKAHSFERWLSRCRDIVDAHTPTSVTLQELQELC 921
            ...||.|..:...|.|||:|:::|.:|..:|::|.|:|.|::|..|.:.|.......:.||:.:.
 Frog   696 AEELCSCPMQNKCLRYRYSLEDLPSLLYGVKLRAQSYESWVNRVTDALSASLNHKKDVIELKVML 760

  Fly   922 KEAETKKFPSSLLIDRLNAAAVEAEKCVTVIQQLGINKVRTRSDHNQEAAQY-----KLTMEELE 981
            ::||.:|||.:.|..:|..|..|||.|.:|.|.|    :..:..||:...:|     |||||||:
 Frog   761 EDAEDRKFPENDLYRKLRDAVKEAETCASVAQLL----LTKKQKHNRLNPEYGKTRTKLTMEELK 821

  Fly   982 LFVQEIDNLCCIIDEGASVRELLVLGKQFVERSESQLQLSLESLEESELETLINEGSSLRIELQQ 1046
            .||.::.:|.|||.:...|:.||...::|.||:...::..:.  :.|:|:.||:.||||.:||.:
 Frog   822 AFVHQLFSLPCIISQARQVKNLLDDVEEFHERAHEAMRDDIP--DSSKLQALIDLGSSLYVELPE 884

  Fly  1047 LDLLQKRLKQCKWYKRSQGLRETSS---KLTYQDVKNLLHIAAADLDPTDPYVDKEMRKLQQIGA 1108
            |..|::.|.|.:|...   :|:|.|   ::|...:|.|:. :...|.|... |:|.|..||::..
 Frog   885 LPRLKQELLQARWLDE---VRQTLSDPHRVTLDVMKKLID-SGVGLAPHHA-VEKAMADLQELLT 944

  Fly  1109 DIEAWESQAAKYFRRLTQQHELGEIEQFLKSASDINGQVPSHGLLKDALRKAREWLRAVEQLQQN 1173
            ..|..| :.||...:...||.:|.||..:..|.:|:..:|:...||:||::|::|...||.:|..
 Frog   945 VSERME-EKAKTCLQARPQHSMGGIESIIVEAKNIHAYLPNVLALKEALQRAKDWTAKVEAIQSG 1008

  Fly  1174 NHVTYCHTLEAMIERGLNIPIQLEELSRMQGHLNSAHQWKDNTACAFLKKGTFYTLLEVLMPRS- 1237
            :|..|...||.::.:|..||::|:.|.:::..:.:|..|::.||..||||.:.||||:||.||: 
 Frog  1009 SHYAYLEQLENLLVKGRPIPVRLDALPQVESQVAAARAWRERTARTFLKKNSSYTLLQVLSPRTD 1073

  Fly  1238 ------------------DAINIDSDLKPRFQDDFLKEKNPAEIVASFKHAEEQELLDMRELRRQ 1284
                              |..::|.|.....::...:.::.|.:||.||..|.:|:..:|.||..
 Frog  1074 IGVYGSSRSKRKKVKELMDEKDLDLDSMSELEEPMEEPRDAASVVAVFKDMEHKEVDAIRSLRSA 1138

  Fly  1285 NMNKNPMRD-----MFCLCKSEFRNLMFNCQLCRDWFHEDCVPPPSATNQNGIVNGGSGPGTNRP 1344
            |:.|..|.|     .||:|:......|..|:||:||||..|||.|..::|    ..||...:...
 Frog  1139 NLVKMTMVDRIEEVRFCVCRKAASGFMLQCELCKDWFHSTCVPLPKTSSQ----KKGSNWQSKDV 1199

  Fly  1345 KWLCPSCVRSKRPRLETILPLLVQLQQLPIRLPEDEALRCLAERAMNWQDRARKALSSPDVSAAQ 1409
            |:||..|:||:||||||||.|||.||:||:||||.|||:||.||||:|||:||:||::.::|.|.
 Frog  1200 KFLCTQCMRSRRPRLETILSLLVSLQKLPVRLPEGEALQCLTERAMSWQDQARQALATDELSCAL 1264

  Fly  1410 EAI------MAQQQQKRRSEGGAGVGNISSPRKPRRRGSL-------------TKEASGSTESDA 1455
            ..:      |.:|..:.::|.........:...|..:|.|             :...|..|..|.
 Frog  1265 AKLSVLSQRMVEQAAREKTEKIISAELQKAAANPDLQGHLPIFQQSSFSRGLSSMAPSPQTPLDY 1329

  Fly  1456 DDDDDEDECRLR-----------------IVEDNFSNDED------------------------- 1478
            ||::.:.:..:|                 .:|.|...||:                         
 Frog  1330 DDEETDSDEDIRETYGYDIKDSGSVKSSSSLEPNLFCDEEIPIKSEEVVSHMWTTSSFCAEHAYS 1394

  Fly  1479 ---------------EPRTAP-ATSTVNSDLLKLLSDSEIENLLDLMMEGDLLEVSLDETQELWR 1527
                           :||.:| ...::...:|:|...::.: |.:|:|.||||||||||||.:||
 Frog  1395 SASKSCVQVSGTPRKQPRKSPLVPRSLEPPVLELSPGAKCQ-LEELLMLGDLLEVSLDETQHIWR 1458

  Fly  1528 ILE-TMPPTLLQAEAMERVVQYMQRQRQQHTNPLPTSGAEDSN----------DSLMVQNSPNSN 1581
            ||: |.||:       |....::.........|:.....:.|.          :.|:.:....|.
 Frog  1459 ILQATHPPS-------EEKFLHVMEDDSLDEKPMKVKSKDSSEKKRKRKLERAEQLLAEGKQRSR 1516

  Fly  1582 SNSGGATGSASNSGRNKKRR---SNDTGGNSAVPRKKQSTPKQTPGKKGSAAAARKSDAKASPAA 1643
                    ......:|||::   .:|.....:...|:.:..::...||...|||:...:|.    
 Frog  1517 --------EFKKLDKNKKKKLKLGHDKAKELSKLAKRLAKEEERKRKKEKVAAAKAELSKE---- 1569

  Fly  1644 STTPGADADAENKQANGGNTNSSTGSGGGNSATTTPTPGSTHKKRKRTSTTATNNNNNNNNNSTN 1708
                                                   ...|||                    
 Frog  1570 ---------------------------------------IAEKKR-------------------- 1575

  Fly  1709 NSNSSTNLNSNTTSGQGAATGGNNATGGQKK----HAQRSQQAAQEDDEEE--CRAENCHKPTGR 1767
                                        :||    .::.....|:|.|:|.  |.|:||.:|...
 Frog  1576 ----------------------------EKKVLDIPSKYDWSGAEESDDENAVCAAQNCQRPCKD 1612

  Fly  1768 EVDWVQCDGGCNEWFHMYCVGLNRSQIKPDDDYICIRCTKTVAIGTQGSG 1817
            :||||||||||:||||..|||:: |::..::||||..|::.   ..||||
 Frog  1613 KVDWVQCDGGCDEWFHQVCVGVS-SEMAENEDYICTNCSRK---RVQGSG 1658

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
lidNP_001245908.1 JmjN 160..201 CDD:128818 25/40 (63%)
ARID 227..312 CDD:198082 50/84 (60%)
PHD1_Lid_like 450..495 CDD:277078 31/44 (70%)
JmjC 624..740 CDD:202224 92/115 (80%)
zf-C5HC2 830..882 CDD:280996 24/51 (47%)
PLU-1 896..1229 CDD:285609 110/340 (32%)
PHD2_KDM5A 1295..1351 CDD:277079 21/55 (38%)
PHD3_KDM5A_like 1755..1805 CDD:277083 27/51 (53%)
kdm5aXP_031754497.1 JmjN 12..53 CDD:128818 25/40 (63%)
ARID_KDM5A 78..169 CDD:350637 52/90 (58%)
PHD1_KDM5A 288..336 CDD:277075 33/47 (70%)
JmjC 463..579 CDD:396791 92/115 (80%)
zf-C5HC2 669..721 CDD:397190 24/51 (47%)
PLU-1 734..1064 CDD:400641 110/341 (32%)
PHD2_KDM5A 1154..1206 CDD:277079 21/55 (38%)
PHD3_KDM5A 1599..1650 CDD:277156 27/51 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 218 1.000 Domainoid score I2602
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H3419
Inparanoid 1 1.050 1253 1.000 Inparanoid score I176
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D664180at2759
OrthoFinder 1 1.000 - - FOG0000761
OrthoInspector 1 1.000 - - otm47834
Panther 1 1.100 - - O PTHR10694
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X397
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.160

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