Sequence 1: | NP_001245908.1 | Gene: | lid / 33837 | FlyBaseID: | FBgn0031759 | Length: | 1838 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_031754497.1 | Gene: | kdm5a / 100492348 | XenbaseID: | XB-GENE-996070 | Length: | 1686 | Species: | Xenopus tropicalis |
Alignment Length: | 1805 | Identity: | 709/1805 - (39%) |
---|---|---|---|
Similarity: | 986/1805 - (54%) | Gaps: | 295/1805 - (16%) |
- Green bases have known domain annotations that are detailed below.
Fly 155 FDTPPECPVFRPTTEEFKNPLAYISKIRSIAEKCGIAKILPPATWSPPFAVDVDKLRFVPRVQRL 219
Fly 220 NELEAKTRVKLNFLDQIAKFWELQGSSLKIPMVERKALDLYTLHRIVQEEGGMEQTTKDRKWAKV 284
Fly 285 ANRMQYPSSKSVGATLKAHYERILHPFEVYTSG-KVLGPTPTSSGSG-----STPVKLEDGGGTD 343
Fly 344 YKAHEIPTRQQIAPPNE------TNTRRSKRFGNSNASCGLSGVTPTTKPSAGVFVKTETKEEFK 402
Fly 403 RDLLSSFNAVNSGGSPLATGTTANTRGASQKKGGEPPALIVDPLMKYICHICNRGDVEESMLLCD 467
Fly 468 GCDDSYHTFCLLPPLTSIPKGEWLCPRCVVEEVSKPQEAFGFEQAEREYTLQQFGQMADQFKQEY 532
Fly 533 FRKPVHLVPTEMVEREFWRIVSSIDEDVTVEYGADLHTMDHGSGFPTKSSLYLLPGDQE-YAESS 596
Fly 597 WNLNNLPLLEDSILGHINADISGMNAPWMYVGMCFAAFCWHNEDHWSYSINYLHWGEPKTWYGVP 661
Fly 662 GSCAEQFEETMKQAAPELFSSQPDLLHQLVTIMNPNILMNNRVPVFRTDQHAGEFVITFPRAYHA 726
Fly 727 GFNQGYNFAEAVNFAPADWLKMGRECVNHYSMLRRFCVFSHDELVCKMALEPAKLTFGIATACYI 791
Fly 792 DMAEMVDTEKKLRKSLLEWGVTRAERRAFELVNDDERHCQECNTTCFLSAVACECNDKLIVCLRH 856
Fly 857 YTVLCGCAPEKHTLIYRYTLDEMPLMLQKLKVKAHSFERWLSRCRDIVDAHTPTSVTLQELQELC 921
Fly 922 KEAETKKFPSSLLIDRLNAAAVEAEKCVTVIQQLGINKVRTRSDHNQEAAQY-----KLTMEELE 981
Fly 982 LFVQEIDNLCCIIDEGASVRELLVLGKQFVERSESQLQLSLESLEESELETLINEGSSLRIELQQ 1046
Fly 1047 LDLLQKRLKQCKWYKRSQGLRETSS---KLTYQDVKNLLHIAAADLDPTDPYVDKEMRKLQQIGA 1108
Fly 1109 DIEAWESQAAKYFRRLTQQHELGEIEQFLKSASDINGQVPSHGLLKDALRKAREWLRAVEQLQQN 1173
Fly 1174 NHVTYCHTLEAMIERGLNIPIQLEELSRMQGHLNSAHQWKDNTACAFLKKGTFYTLLEVLMPRS- 1237
Fly 1238 ------------------DAINIDSDLKPRFQDDFLKEKNPAEIVASFKHAEEQELLDMRELRRQ 1284
Fly 1285 NMNKNPMRD-----MFCLCKSEFRNLMFNCQLCRDWFHEDCVPPPSATNQNGIVNGGSGPGTNRP 1344
Fly 1345 KWLCPSCVRSKRPRLETILPLLVQLQQLPIRLPEDEALRCLAERAMNWQDRARKALSSPDVSAAQ 1409
Fly 1410 EAI------MAQQQQKRRSEGGAGVGNISSPRKPRRRGSL-------------TKEASGSTESDA 1455
Fly 1456 DDDDDEDECRLR-----------------IVEDNFSNDED------------------------- 1478
Fly 1479 ---------------EPRTAP-ATSTVNSDLLKLLSDSEIENLLDLMMEGDLLEVSLDETQELWR 1527
Fly 1528 ILE-TMPPTLLQAEAMERVVQYMQRQRQQHTNPLPTSGAEDSN----------DSLMVQNSPNSN 1581
Fly 1582 SNSGGATGSASNSGRNKKRR---SNDTGGNSAVPRKKQSTPKQTPGKKGSAAAARKSDAKASPAA 1643
Fly 1644 STTPGADADAENKQANGGNTNSSTGSGGGNSATTTPTPGSTHKKRKRTSTTATNNNNNNNNNSTN 1708
Fly 1709 NSNSSTNLNSNTTSGQGAATGGNNATGGQKK----HAQRSQQAAQEDDEEE--CRAENCHKPTGR 1767
Fly 1768 EVDWVQCDGGCNEWFHMYCVGLNRSQIKPDDDYICIRCTKTVAIGTQGSG 1817 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
lid | NP_001245908.1 | JmjN | 160..201 | CDD:128818 | 25/40 (63%) |
ARID | 227..312 | CDD:198082 | 50/84 (60%) | ||
PHD1_Lid_like | 450..495 | CDD:277078 | 31/44 (70%) | ||
JmjC | 624..740 | CDD:202224 | 92/115 (80%) | ||
zf-C5HC2 | 830..882 | CDD:280996 | 24/51 (47%) | ||
PLU-1 | 896..1229 | CDD:285609 | 110/340 (32%) | ||
PHD2_KDM5A | 1295..1351 | CDD:277079 | 21/55 (38%) | ||
PHD3_KDM5A_like | 1755..1805 | CDD:277083 | 27/51 (53%) | ||
kdm5a | XP_031754497.1 | JmjN | 12..53 | CDD:128818 | 25/40 (63%) |
ARID_KDM5A | 78..169 | CDD:350637 | 52/90 (58%) | ||
PHD1_KDM5A | 288..336 | CDD:277075 | 33/47 (70%) | ||
JmjC | 463..579 | CDD:396791 | 92/115 (80%) | ||
zf-C5HC2 | 669..721 | CDD:397190 | 24/51 (47%) | ||
PLU-1 | 734..1064 | CDD:400641 | 110/341 (32%) | ||
PHD2_KDM5A | 1154..1206 | CDD:277079 | 21/55 (38%) | ||
PHD3_KDM5A | 1599..1650 | CDD:277156 | 27/51 (53%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 218 | 1.000 | Domainoid score | I2602 |
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 1 | 1.000 | - | - | H3419 | |
Inparanoid | 1 | 1.050 | 1253 | 1.000 | Inparanoid score | I176 |
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D664180at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000761 | |
OrthoInspector | 1 | 1.000 | - | - | otm47834 | |
Panther | 1 | 1.100 | - | - | O | PTHR10694 |
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 1 | 1.000 | - | - | X397 | |
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
8 | 8.160 |