DRSC/TRiP Functional Genomics Resources

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Protein Alignment eIF4A and Ddx19b

DIOPT Version :10

Sequence 1:NP_476595.1 Gene:eIF4A / 33835 FlyBaseID:FBgn0001942 Length:403 Species:Drosophila melanogaster
Sequence 2:XP_008770756.1 Gene:Ddx19b / 690693 RGDID:1593382 Length:492 Species:Rattus norvegicus


Alignment Length:418 Identity:156/418 - (37%)
Similarity:254/418 - (60%) Gaps:29/418 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDDRN--EIPQDGPASMEPEGVIESTWHEVYDNFDDMNLREELLRGIYGYGFEKPSAIQQRAIIP 63
            :|:.|  |:.|..|:|  |...::|        |:::.|:.:||:|:|..||.:||.||:.| :|
  Rat    84 VDNTNQVEVLQRDPSS--PLYSVKS--------FEELRLKPQLLQGVYAMGFNRPSKIQENA-LP 137

  Fly    64 CVRG---RDVIAQAQSGTGKTATFSIAILQQIDTSIRECQALILAPTRELATQIQRVVMALGE-Y 124
            .:..   :::|||:||||||||.|.:|:|.|::.:....|.|.|:||.|||.|..:|:..:|: |
  Rat   138 LMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANNHPQCLCLSPTYELALQTGKVIEQMGKFY 202

  Fly   125 MKVHSHACIGGTNVREDARILESGCHVVVGTPGRVYDMINR-KVLRTQYIKLFVLDEADEML-SR 187
            .::.....:.|..:....::   |..:|:||||.|.|..:: |.:..:.||:|||||||.|: ::
  Rat   203 PELKLAYAVRGNKLERGQKV---GEQIVIGTPGTVLDWCSKMKFIDPKKIKVFVLDEADVMIATQ 264

  Fly   188 GFKDQIQDVFKMLPPDVQVILLSATMPPDVLEVSRCFMRDPVSILVKKEELTLEGIKQFYVNVKQ 252
            |.:||...:.:|||.:.|::|.|||....|.:.::..:.||..|.:|:||.||:.|||:||....
  Rat   265 GHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNIIKLKREEETLDTIKQYYVLCNN 329

  Fly   253 ENWKLGTLCDLYDTLSITQSVIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRS 317
            ...|...||:||..::|.|::|||:||:....|..|:|.....|:.:.|:|....|..::::||.
  Rat   330 REEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFRE 394

  Fly   318 GSSRVLITTDLLARGIDVQQVSLVINYDLPSNR------ENYIHRIGRGGRFGRKGVAINFI-TD 375
            |..:||:||::.||||||:|||:|||:|||.::      |.|:|||||.||||::|:|:|.: :.
  Rat   395 GKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSK 459

  Fly   376 DDRRILKDIEQFYHTTIEEMPANIADLI 403
            ....||..|::.::..||.:..:..|.|
  Rat   460 HSMNILNRIQEHFNKKIERLDTDDLDEI 487

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eIF4ANP_476595.1 DEAD-like_helicase_N 6..403 CDD:475120 153/409 (37%)
Ddx19bXP_008770756.1 DEAD-like_helicase_N 88..316 CDD:475120 86/241 (36%)
SF2_C_DEAD 320..456 CDD:350174 60/135 (44%)

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