DRSC/TRiP Functional Genomics Resources

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Protein Alignment eIF4A and mel-46

DIOPT Version :10

Sequence 1:NP_476595.1 Gene:eIF4A / 33835 FlyBaseID:FBgn0001942 Length:403 Species:Drosophila melanogaster
Sequence 2:NP_001255909.1 Gene:mel-46 / 178469 WormBaseID:WBGene00020284 Length:973 Species:Caenorhabditis elegans


Alignment Length:381 Identity:121/381 - (31%)
Similarity:207/381 - (54%) Gaps:24/381 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 MEPEGVIE----STWHEVYDN--FDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQ 73
            ||...|||    .:..:|..|  |:.:.:.::.|..:....|::||.:|.|||...:.|||::.|
 Worm     1 MEFSEVIEVLDRGSSIDVQSNCTFESLMIGQKTLERLKNSQFDRPSPVQARAIPVGLLGRDMLVQ 65

  Fly    74 AQSGTGKTATFSIAILQQIDTSIRECQALILAPTRELATQIQ---RVVMALGEYMKVHSHACIGG 135
            |:||||||..||:..::.:|:.....|.:|:.||||::.||:   |.|...|....|:    :||
 Worm    66 AKSGTGKTLVFSVLAVENLDSRSSHIQKVIVTPTREISVQIKETVRKVAPTGARTSVY----VGG 126

  Fly   136 T----NVREDARILESGCHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDV 196
            :    |:.:   :.::...:|:|||||:..::....:...::..|||||||:::...|:|.|..:
 Worm   127 SAHKLNLID---LKQTRPQIVIGTPGRIAQLVKLGAMNMSHVDFFVLDEADKLMDEVFRDDINII 188

  Fly   197 FKMLPPDVQVILLSATMPPDVLEVSRCFMRDPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLC 261
            ...||...||.:.|||.|.::..:...|:||...:....:::.|.||||:.  |.:.:..|..|.
 Worm   189 INSLPQIRQVAVFSATYPRNLDNLLSTFLRDAALVRFNADDVQLFGIKQYV--VAKCSPMLEKLT 251

  Fly   262 DLYDTLSITQSVIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITT 326
            .:..::...|:::||:...|.:.:...:......|:.:...|.|:||::.:.|.|:...::|:::
 Worm   252 HVLKSIRYVQALVFCDQISKCEPIATHLKSSGLDVTFVSSAMSQKDRQLAVDQLRAKRVKILVSS 316

  Fly   327 DLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILK 382
            ||.|||||...|:||:|.|..:|.|.|.|||||..|||..|.|:..:  :|.|.||
 Worm   317 DLTARGIDADNVNLVVNIDAAANEETYFHRIGRAARFGAHGAAVTLL--EDERALK 370

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eIF4ANP_476595.1 DEAD-like_helicase_N 6..403 CDD:475120 121/381 (32%)
mel-46NP_001255909.1 DEADc_DDX20 33..224 CDD:350701 64/197 (32%)
SF2_C_DEAD 235..363 CDD:350174 43/129 (33%)
PTZ00121 <429..>882 CDD:173412
Blue background indicates that the domain is not in the aligned region.

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