DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment eIF4A and eif4a2

DIOPT Version :9

Sequence 1:NP_001245907.1 Gene:eIF4A / 33835 FlyBaseID:FBgn0001942 Length:403 Species:Drosophila melanogaster
Sequence 2:XP_012818072.1 Gene:eif4a2 / 100124955 XenbaseID:XB-GENE-978554 Length:407 Species:Xenopus tropicalis


Alignment Length:394 Identity:291/394 - (73%)
Similarity:354/394 - (89%) Gaps:1/394 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 GPASMEPEGVIESTWHEVYDNFDDMNLREELLRGIYGYGFEKPSAIQQRAIIPCVRGRDVIAQAQ 75
            ||..|:|:|||||.|:|:.||||||||:|.||||||.|||||||||||||||||::|.|||||||
 Frog    14 GPDGMDPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQ 78

  Fly    76 SGTGKTATFSIAILQQIDTSIRECQALILAPTRELATQIQRVVMALGEYMKVHSHACIGGTNVRE 140
            |||||||||:|:||||::..::|.|||:||||||||.|||:|::|||:||....||||||||||.
 Frog    79 SGTGKTATFAISILQQLEIDLKETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRN 143

  Fly   141 DARILESGC-HVVVGTPGRVYDMINRKVLRTQYIKLFVLDEADEMLSRGFKDQIQDVFKMLPPDV 204
            :.:.|::.. |:||||||||:||:||:.|..::||:||||||||||||||||||.::|:.|..::
 Frog   144 EMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLSTNI 208

  Fly   205 QVILLSATMPPDVLEVSRCFMRDPVSILVKKEELTLEGIKQFYVNVKQENWKLGTLCDLYDTLSI 269
            ||:|||||||.|||||::.|||||:.|||||||||||||||||:||::|.|||.||||||:||:|
 Frog   209 QVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTI 273

  Fly   270 TQSVIFCNTRRKVDQLTQEMSIHNFTVSAMHGDMEQRDREVIMKQFRSGSSRVLITTDLLARGID 334
            ||:|||.|||||||.||::|...:|||||:||||:|::|:|||::||||||||||||||||||||
 Frog   274 TQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGID 338

  Fly   335 VQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGVAINFITDDDRRILKDIEQFYHTTIEEMPANI 399
            |||||||||||||:||||||||||||||||||||||||:|::|:|||:|||.||:||:||||.|:
 Frog   339 VQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTTVEEMPMNV 403

  Fly   400 ADLI 403
            ||||
 Frog   404 ADLI 407

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eIF4ANP_001245907.1 PTZ00424 6..403 CDD:185609 289/392 (74%)
DEADc 32..232 CDD:238167 139/200 (70%)
Helicase_C 254..358 CDD:278689 82/103 (80%)
eif4a2XP_012818072.1 PTZ00424 21..407 CDD:185609 285/385 (74%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 232 1.000 Domainoid score I2366
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 609 1.000 Inparanoid score I911
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D321438at33208
OrthoFinder 1 1.000 - - FOG0000304
OrthoInspector 1 1.000 - - otm48604
Panther 1 1.100 - - O PTHR24031
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R594
SonicParanoid 1 1.000 - - X250
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.190

Return to query results.
Submit another query.