DRSC/TRiP Functional Genomics Resources

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Protein Alignment chic and PRF3

DIOPT Version :9

Sequence 1:NP_001245905.1 Gene:chic / 33834 FlyBaseID:FBgn0000308 Length:126 Species:Drosophila melanogaster
Sequence 2:NP_200471.3 Gene:PRF3 / 835761 AraportID:AT5G56600 Length:131 Species:Arabidopsis thaliana


Alignment Length:130 Identity:54/130 - (41%)
Similarity:75/130 - (57%) Gaps:5/130 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSWQDYVDNQLL---ASQCVTKACIAGHDGNIWAQSSGF-EVTKEELSKLISGFDQQDGLTSNGV 61
            ||||.|||:.|:   |...:|.|.|.|.||::||||:.| :|..||:..:...|.....|...|:
plant     1 MSWQTYVDDHLMCDVAGNRLTAAAILGQDGSVWAQSNNFPQVKPEEIQGIKDDFTTPGTLAPTGL 65

  Fly    62 TLAGQRYIYLSG-TDRVVRAKLGRSGVHCMKTTQAVIVSIYEDPVQPQQAASVVEKLGDYLITCG 125
            .|.|.:|:.:.| .:.|:|.|.|..||...|||.|::..||::|:.|.|...|||.||:|||..|
plant    66 FLGGNKYMVIQGEPNAVIRGKKGAGGVTIKKTTLALVFGIYDEPMTPGQCNMVVENLGEYLIESG 130

  Fly   126  125
            plant   131  130

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
chicNP_001245905.1 PROF 1..126 CDD:214646 54/130 (42%)
PRF3NP_200471.3 Profilin 2..128 CDD:365966 51/125 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 103 1.000 Domainoid score I2250
eggNOG 1 0.900 - - E1_KOG1755
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 103 1.000 Inparanoid score I2147
OMA 1 1.010 - - QHG53820
OrthoDB 1 1.010 - - D1428600at2759
OrthoFinder 1 1.000 - - FOG0002709
OrthoInspector 1 1.000 - - otm2534
orthoMCL 1 0.900 - - OOG6_101239
Panther 1 1.100 - - O PTHR11604
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X4911
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.840

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