DRSC/TRiP Functional Genomics Resources

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Protein Alignment chic and pfn2a

DIOPT Version :9

Sequence 1:NP_001245905.1 Gene:chic / 33834 FlyBaseID:FBgn0000308 Length:126 Species:Drosophila melanogaster
Sequence 2:NP_958874.2 Gene:pfn2a / 321383 ZFINID:ZDB-GENE-030131-34 Length:139 Species:Danio rerio


Alignment Length:121 Identity:32/121 - (26%)
Similarity:52/121 - (42%) Gaps:35/121 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSWQDYVDNQLLASQCVTKACIAGHDGN-IWAQSSG--FE-VTKEELSKLISGFDQQDGLTSNGV 61
            ||||.||||.:....|...|.:...|.. :||.|.|  |. :|.:|:. :|.|.| ::|..::|:
Zfish     1 MSWQSYVDNLMADGSCQDAAIVGYTDAKYVWASSEGGTFSGITPDEID-VIGGKD-REGFFTSGL 63

  Fly    62 TLAGQRYIYLSGTDRV-------VRAK----------------------LGRSGVH 88
            ||..::...:..:.:|       :|.|                      :|:.|||
Zfish    64 TLGKKKCSVIRDSLQVEGDWTMDIRTKSHNGEPTYNVSIGRAGKVLVLVMGKEGVH 119

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
chicNP_001245905.1 PROF 1..126 CDD:214646 32/121 (26%)
pfn2aNP_958874.2 PROF 1..139 CDD:214646 32/121 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1755
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1428600at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.820

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