DRSC/TRiP Functional Genomics Resources

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Protein Alignment chic and pfn-1

DIOPT Version :9

Sequence 1:NP_001245905.1 Gene:chic / 33834 FlyBaseID:FBgn0000308 Length:126 Species:Drosophila melanogaster
Sequence 2:NP_493258.1 Gene:pfn-1 / 173161 WormBaseID:WBGene00003989 Length:132 Species:Caenorhabditis elegans


Alignment Length:129 Identity:34/129 - (26%)
Similarity:63/129 - (48%) Gaps:5/129 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 WQDYVDNQLLASQCVTKACIAG-HDGNIWAQSSG---FEVTKEELSKLISGFDQQDGLTSNGVTL 63
            |..|:|....|:..:.:..|.| .||::||::..   |:.::|||...::.|:....:.:.|..:
 Worm     4 WNAYIDTMTAAAPSIKRCAIVGAADGSVWARTEADNVFKASEEELKTFVALFNDVTQVPAKGADI 68

  Fly    64 AGQRYIYLSGTDRVVRAKLGRSGVHCMKTTQAVIVSIYEDPVQ-PQQAASVVEKLGDYLITCGY 126
            .|..|:.....:.::..|...:|...:||..||::::||.|.: ..|....||.:..||...||
 Worm    69 EGVHYVVPRTEESLIFGKKENTGFFAVKTKSAVLIAVYEGPNEVAAQVRKAVESMQTYLNNAGY 132

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
chicNP_001245905.1 PROF 1..126 CDD:214646 32/127 (25%)
pfn-1NP_493258.1 PROF 2..132 CDD:214646 32/127 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1755
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1428600at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11604
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.920

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