DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG9044 and sds-22

DIOPT Version :9

Sequence 1:NP_001260114.1 Gene:CG9044 / 33825 FlyBaseID:FBgn0031752 Length:1318 Species:Drosophila melanogaster
Sequence 2:NP_495653.1 Gene:sds-22 / 174266 WormBaseID:WBGene00011637 Length:326 Species:Caenorhabditis elegans


Alignment Length:354 Identity:79/354 - (22%)
Similarity:150/354 - (42%) Gaps:63/354 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDPQKITELANLLRQNGDK----ILSSEFTLTLSGSLLRALNDSFTLIADTEIG---TGAGYLQP 58
            |...|..|:..|.|:|.::    :|.::|.|:           :|. |...||.   |.|.::..
 Worm     1 MSNDKSAEVVVLPRENDEESKEPVLKNQFDLS-----------TFD-IDSPEIDLTHTRADHIPD 53

  Fly    59 -QSFQVVKPINAKS----SVFPDLQLVHDFVQKTTLLKLTYFPSE----HYFEGAIDIAKFRALR 114
             ..|..::.:..::    |:.|.:..:      .||..|..:.::    .:.|..:::..     
 Worm    54 LTGFPKIEELRMRNNLLVSISPTISSL------VTLTSLDLYENQLTEISHLESLVNLVS----- 107

  Fly   115 RLEVNKINIGQVVGIQPLRGQLQHLICVKS-LTSVDDI--ITRCG----GDNSNGFVWN-----E 167
             |:::...|.|:.|:..|. :|:.|..|.: :..::::  :|:..    |||....:.|     .
 Worm   108 -LDLSYNRIRQINGLDKLT-KLETLYLVSNKIEKIENLEALTQLKLLELGDNRIKKIENIGHLVN 170

  Fly   168 LKTADFSYNSLRSVDTALEFAQHLQHLNLRHNKLTSVAAIKWLPHLKTLDLSYNCLTHLPQFH-M 231
            |.......|.:|.:: .:|..|.|..|:|..|::..:..::.|.:||.|.||..   .|...| :
 Worm   171 LDELFIGKNKIRQLE-GVETLQKLSVLSLPGNRIVKIENVEQLNNLKELYLSDQ---GLQDIHGV 231

  Fly   232 EACKRLQLLNISNNYVEELLDVAKLDALYNLDLSDNCLLEHSQLLPLSALMSLIVLNLQGNPLAC 296
            |....|.||:::||.::....|.:|::|.:...:||.:...|::..||.|..|..:.|:.||...
 Worm   232 EPLTNLLLLDVANNEIKTFSGVERLESLNDFWANDNKVESFSEIEQLSKLKGLQTVYLERNPFYF 296

  Fly   297 NPKHRQATAQYLHKNSATVKFVLDFEPLT 325
            |.     |.||..|...|:..|...:..|
 Worm   297 ND-----TNQYRRKVMMTLTQVTQIDATT 320

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG9044NP_001260114.1 LIP1 6..96 CDD:292526 19/101 (19%)
LRR_RI <102..302 CDD:238064 51/212 (24%)
leucine-rich repeat 168..190 CDD:275380 4/21 (19%)
LRR_4 189..229 CDD:289563 12/39 (31%)
LRR_8 190..245 CDD:290566 16/55 (29%)
leucine-rich repeat 191..212 CDD:275380 5/20 (25%)
leucine-rich repeat 213..236 CDD:275380 8/23 (35%)
leucine-rich repeat 237..258 CDD:275380 7/20 (35%)
leucine-rich repeat 259..283 CDD:275380 7/23 (30%)
sds-22NP_495653.1 leucine-rich repeat 40..59 CDD:275380 5/18 (28%)
leucine-rich repeat 60..82 CDD:275380 2/27 (7%)
LRR_8 82..137 CDD:290566 12/61 (20%)
LRR_4 83..123 CDD:289563 7/45 (16%)
leucine-rich repeat 83..104 CDD:275380 3/20 (15%)
LRR_4 104..144 CDD:289563 8/46 (17%)
leucine-rich repeat 105..126 CDD:275380 5/27 (19%)
LRR_8 125..181 CDD:290566 10/56 (18%)
LRR_4 125..167 CDD:289563 8/42 (19%)
leucine-rich repeat 127..148 CDD:275380 3/20 (15%)
leucine-rich repeat 149..170 CDD:275380 4/20 (20%)
leucine-rich repeat 171..192 CDD:275380 4/21 (19%)
leucine-rich repeat 193..214 CDD:275380 5/20 (25%)
leucine-rich repeat 215..236 CDD:275380 8/23 (35%)
leucine-rich repeat 256..283 CDD:275380 8/26 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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