DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gpdh1 and gpd1a

DIOPT Version :9

Sequence 1:NP_001260112.1 Gene:Gpdh1 / 33824 FlyBaseID:FBgn0001128 Length:360 Species:Drosophila melanogaster
Sequence 2:NP_001017709.1 Gene:gpd1a / 550404 ZFINID:ZDB-GENE-050417-209 Length:351 Species:Danio rerio


Alignment Length:352 Identity:227/352 - (64%)
Similarity:272/352 - (77%) Gaps:5/352 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MADKVNVCIVGSGNWGSAIAKIVGANAAALPEFEERVTMFVYEELIDGKKLTEIINETHENVKYL 65
            |:....|||||||||||||||||||||....:|:..|.|:|:||:::|:|||||||..|||||||
Zfish     1 MSSPKRVCIVGSGNWGSAIAKIVGANARNNSKFDSTVNMWVFEEMVNGRKLTEIINTEHENVKYL 65

  Fly    66 KGHKLPPNVVAVPDLVEAAKNADILIFVVPHQFIPNFCKQLLGKIKPNAIAISLIKGFDKAEG-G 129
            .|||||.|||||.|||||||:||||:||:|||||...|..:.||||.:|:.:|||||.|  || .
Zfish    66 PGHKLPENVVAVADLVEAAKSADILLFVIPHQFIGRVCDTMKGKIKADALGMSLIKGVD--EGPD 128

  Fly   130 GIDLISHIITRHLKIPCAVLMGANLANEVAEGNFCETTIGCTDKKYGKVLRDLFQANHFRVVVVD 194
            |:.|||.:|...|.|..:||||||:|||||:..||||||||.|:.:|.:|::|.|.:||||.||.
Zfish   129 GLKLISEVIEEKLGISMSVLMGANIANEVADEKFCETTIGCRDEAHGALLKELMQTHHFRVTVVQ 193

  Fly   195 DADAVEVCGALKNIVACGAGFVDGLKLGDNTKAAVIRLGLMEMIRFVDVFYPGSKLS--TFFESC 257
            :||.||:|||||||||.||||.|||..|||||||||||||||||.|..:|.....:|  ||.|||
Zfish   194 EADVVEICGALKNIVAVGAGFCDGLGFGDNTKAAVIRLGLMEMISFARLFCTAGSVSPATFLESC 258

  Fly   258 GVADLITTCYGGRNRRVSEAFVTSGKTIEELEKEMLNGQKLQGPPTAEEVNYMLKNKGLEDKFPL 322
            |||||||||||||||||:|||..:||::|:||||||||||||||.||.||:.:|||||:..:|||
Zfish   259 GVADLITTCYGGRNRRVAEAFAKTGKSLEDLEKEMLNGQKLQGPATAAEVHTILKNKGVLARFPL 323

  Fly   323 FTAIHKICTNQLKPNDLIDCIRNHPEH 349
            |.|:.:||.......:.|.|::|||||
Zfish   324 FNAVFEICYEGRPVTEFIHCLQNHPEH 350

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gpdh1NP_001260112.1 glycerol3P_DH 6..343 CDD:274551 220/339 (65%)
gpd1aNP_001017709.1 glycerol3P_DH 6..344 CDD:274551 220/339 (65%)
NAD_Gly3P_dh_N 7..174 CDD:279543 111/168 (66%)
NAD_Gly3P_dh_C 198..337 CDD:284817 96/138 (70%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170596718
Domainoid 1 1.000 222 1.000 Domainoid score I2519
eggNOG 1 0.900 - - E1_COG0240
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5593
Inparanoid 1 1.050 454 1.000 Inparanoid score I1567
OMA 1 1.010 - - QHG56883
OrthoDB 1 1.010 - - D346303at33208
OrthoFinder 1 1.000 - - FOG0000846
OrthoInspector 1 1.000 - - otm25442
orthoMCL 1 0.900 - - OOG6_100385
Panther 1 1.100 - - O PTHR11728
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R508
SonicParanoid 1 1.000 - - X660
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1615.800

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